PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0155961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YB | ||||||||
Protein Properties | Length: 207aa MW: 21108.2 Da PI: 7.1444 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 187.1 | 1.3e-58 | 23 | 118 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+ RcHm_v2.0_Chr2g0155961 23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQ 109 89************************************************************************************* PP NF-YB 89 kyrelegek 97 kyre+egek RcHm_v2.0_Chr2g0155961 110 KYREMEGEK 118 *******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MADSDNDSGG HNGHSQGGEL SAREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV 60 SEFISFVTGE ASDKCQREKR KTINGDDLLW AMTTLGFEEY VEPLKIYLQK YREMEGEKGA 120 VGTAGRDKEG GSGGGGSAAG GGGGSGGGLS SGTSGGGGGG AFNGVYGGMG MLGHHQGHVY 180 GSGGYQHQMG IGEKRGGSGG GASVRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-75 | NF-YB family protein |