PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0153661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 437aa    MW: 47571 Da    PI: 5.9367
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0153661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.91.7e-113754343374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                              lLl+cAe v+ ++l+ a+ lL ++sel+sp g++ +R+ ayf+ AL++r+ +s+ ++y  l++++ +  +s++ ++al++++ +sP
  RcHm_v2.0_Chr2g0153661  75 GLLLQCAEGVAMDNLHDASDLLPEISELSSPFGSSPERVGAYFAHALQTRVISSCLGTYTPLTTKTLTVAQSQRIFNALQAYNSISP 161
                             58************************************************************************************* PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                             ++kfsh+taNqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pf
  RcHm_v2.0_Chr2g0153661 162 LVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----STELLESTGRRLADFASSLGLPF 244
                             ************************************************************....99********************* PP

                    GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                             ef++l  k  +  el++L ++p Ea++V++++  h l+d ++s       +L+ +  l+Pk++++veq+++h s+sFl rf+eal+y
  RcHm_v2.0_Chr2g0153661 245 EFQPLEGKIGSISELSQLGIRPSEATVVHWMH--HCLYDVTGSDLA----TLRSLSLLRPKLITIVEQDLSH-SGSFLGRFVEALHY 324
                             ****9888888889*****************9..888877777777....**********************.899*********** PP

                    GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                             ysalfd+l  +l  +s er++vE++l+g ei+n++a  g +r+ + + +e+W e l+++GF+pv+l+ + a+qa lll +++++gy+
  RcHm_v2.0_Chr2g0153661 325 YSALFDALGDGLTVDSLERHMVEQQLFGCEIRNILAVGGPKRTGEIK-VERWGEELKRVGFRPVSLGGNPAAQAGLLLGMFPWKGYT 410
                             *****************************************998887.9************************************** PP

                    GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                             + ee+g+l lgWkd +L+++SaW+
  RcHm_v2.0_Chr2g0153661 411 LVEENGCLKLGWKDLSLLTASAWQ 434
                             ***********************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    
MLQSLVPQSP IGANPKNPTS SSSSMKTKRA DRDDSDSAAD DPSFSNKRPS FSREPTAEPA  60
EQVAEGESAG LKLLGLLLQC AEGVAMDNLH DASDLLPEIS ELSSPFGSSP ERVGAYFAHA  120
LQTRVISSCL GTYTPLTTKT LTVAQSQRIF NALQAYNSIS PLVKFSHFTA NQAIFQALDG  180
EDHVHVIDLD IMQGLQWPGL FHILASRSKK IRSMRITGFG SSTELLESTG RRLADFASSL  240
GLPFEFQPLE GKIGSISELS QLGIRPSEAT VVHWMHHCLY DVTGSDLATL RSLSLLRPKL  300
ITIVEQDLSH SGSFLGRFVE ALHYYSALFD ALGDGLTVDS LERHMVEQQL FGCEIRNILA  360
VGGPKRTGEI KVERWGEELK RVGFRPVSLG GNPAAQAGLL LGMFPWKGYT LVEENGCLKL  420
GWKDLSLLTA SAWQPSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein