PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0152181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 623aa    MW: 71020.6 Da    PI: 8.6125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0152181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.4e-13391161598
                             -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             ++ +p+kf+ ++ ++      + l+ +sg +Wev+l  ++++++++++kGW eF     L+ g f+vF+++g+s f  +v +f+
  RcHm_v2.0_Chr2g0152181  39 WVKVPNKFVMKYRKD--LLNSVYLKLPSGSEWEVEL--TRCKDKIWFEKGWPEFSMFCSLDYGSFLVFQYEGNSHF--HVCIFD 116
                             5679*****999766..6668***************..**********************************9999..999997 PP
2B357.81.9e-18264358199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+  + psd+ +s  l lp kfa++h +k++ s  + l+ ++g +W+v+++y+    +  ++ GW  Fvk+n+L+ gD++vF l+++
  RcHm_v2.0_Chr2g0152181 264 FIVSMRPSDMQSS--LALPLKFAKRHLIKQPDS-NINLQVLDGSTWSVEFKYSEEE-EARFQHGWMTFVKDNNLELGDVCVFVLIKD 346
                             5566767777766..9**********6555555.8***************776655.3689************************99 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              +  l+v +fr+
  RcHm_v2.0_Chr2g0152181 347 IKLLLRVVFFRT 358
                             666688877776 PP
3B3611.9e-19420501486
                             E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             + +++++   ++++lp++f +++  +++ ++    +l+ ++gr+W+vk++y+   +r  l kGW+ Fv++n+Lk+gD++vF+l++
  RcHm_v2.0_Chr2g0152181 420 IVMQPSSIHYDMMSLPNEFSKRYlmKLP-AG--IAILQVSDGRTWSVKFKYDHANSRARLLKGWSAFVRDNNLKVGDVCVFTLIN 501
                             56788999999************75444.33..578899************88888989999********************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    
MASLPLPRFS STTPHFFRII LEDTSRHKLK RWSVDPLLWV KVPNKFVMKY RKDLLNSVYL  60
KLPSGSEWEV ELTRCKDKIW FEKGWPEFSM FCSLDYGSFL VFQYEGNSHF HVCIFDMSAT  120
EIDYPITMPK IEEAVEDDDL SIEILEDFQP SPKARMQSPL PCPPYKKMRT SLSSNANMNF  180
DRENTQPCDM LEKPITKEDS HCTKLEVKSM ENKGVDDLSA EKDGRVTGGS CGTQTFLIPT  240
CHQVLGSALA LRRAYDFRTE NPSFIVSMRP SDMQSSLALP LKFAKRHLIK QPDSNINLQV  300
LDGSTWSVEF KYSEEEEARF QHGWMTFVKD NNLELGDVCV FVLIKDIKLL LRVVFFRTSE  360
AINWFLYGGN SFPTKRDGGS FSSSQRFLNR THHEALGMMK QLTATEKANA FKSDKPSFRI  420
VMQPSSIHYD MMSLPNEFSK RYLMKLPAGI AILQVSDGRT WSVKFKYDHA NSRARLLKGW  480
SAFVRDNNLK VGDVCVFTLI NCIELLFEVA FFPTEKSKNF PSPTGHGRGG IVQVEKTRSP  540
AVKIEPECNM DCEIGPSCSL EIGNKMSKIS VQVTQRPSSS LRASDVNLEV ANKFSSKNPF  600
FKITIGMSQL NFLAVSSNRR SKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-31B3 family protein