PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0151681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 370aa MW: 41584.9 Da PI: 7.3303 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.4 | 1.5e-33 | 201 | 258 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+Hnh+ RcHm_v2.0_Chr2g0151681 201 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCLVKKRVERSFQDPTIVITTYEGQHNHQ 258 8********************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence |
MSKEKKSPYL QYDPFDYNPH EIDRSSFPFF NYGSNSSIYN IPQTPADPQT QNLHGFESDP 60 SYLMSFADCL NGSVDYTTLS KAFDISCSSS EVISPPLLDQ DDNSNTKAVA AGVGDQNPST 120 PNSSLSCSSN EAGAANHEHG NDQDSDKISK KDKHPKVVQS EEAPGDHEDK SKKVNKAKKK 180 EKRQREPRFA FLTKSEIDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CLVKKRVERS 240 FQDPTIVITT YEGQHNHQCP ATLRGSINAV GMLSPSFLAS AASGGFGTSN NESPRFPHEL 300 LLTQLLTPVN NNQLQLQAHH HHHDPASSML YSNLMNTLHQ NQQQQQQLHV PHDYNMLQNL 360 ASSFSHKEKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 185 | KEKRQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 2e-51 | WRKY family protein |