PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0151031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28740.5 Da    PI: 9.9629
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0151031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-312978150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  RcHm_v2.0_Chr2g0151031 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 78
                            79***********************************************8 PP
2K-box114.31.2e-37961924100
                   K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                             s++ s++ea+ + +qqe++kL+++i+++q+++Rh+lGe L++L++keL++Le +Lek++++iRskKne+l+++ie++qk+e elq++
  RcHm_v2.0_Chr2g0151031  96 SNTGSVTEANVQFYQQEASKLRRQIREIQNSNRHILGEALSTLNVKELKNLEGRLEKGISRIRSKKNEMLFAEIEYMQKREIELQNH 182
                             334449********************************************************************************* PP

                   K-box  91 nkaLrkklee 100
                             n+ Lr+k++e
  RcHm_v2.0_Chr2g0151031 183 NNFLRAKIAE 192
                             *******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEFPKQITPA DDPESSSQKK LGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALIVFST RGRLYEYANN SVRATIERYK KACDSSNTGS VTEANVQFYQ QEASKLRRQI  120
REIQNSNRHI LGEALSTLNV KELKNLEGRL EKGISRIRSK KNEMLFAEIE YMQKREIELQ  180
NHNNFLRAKI AENDRAQQQQ ANMMPGTSSA YDQSMPPPQS YDRSFLPVIL ESNHHYNRQG  240
QNQTPLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-120MIKC_MADS family protein