PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0147681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26173.8 Da PI: 10.1861 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.9 | 1.3e-18 | 40 | 87 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++e snr+vtfskR++g++ KA ELS L++ae a i++s +g+++ + RcHm_v2.0_Chr2g0147681 40 KVEAASNRHVTFSKRKKGLFNKAAELSLLTGAETAAIVVSGNGRMFGF 87 67899***************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MAEPNNNNVL LSPVDESNNN NVLPPPVKKT KGRRRVEIKK VEAASNRHVT FSKRKKGLFN 60 KAAELSLLTG AETAAIVVSG NGRMFGFGSS SCDAVIHRYL AESNPQAARE PDRRNKNDAV 120 NSANLAKLRQ QLLEARRQLE EEKKLAVMIQ QRKQVAAVAG PAELWWEEEM IDQNPKELES 180 YSEALHRLKS DVERRAQQKI MNLPCRYTSL MDGRVVMGEN FMNNNNTNMN NM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 2e-21 | M-type_MADS family protein |