PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0145631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 552aa    MW: 60867.8 Da    PI: 5.8108
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0145631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.84.9e-801585442374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svse...lykal.ppsetseknsseelaalkl 83 
                             ++lL  cA a++ g+l+++q+lL  l+elas +gd+++Rlaa+ ++AL ++l++ s+s+    ++++ p+ + s+++     +    
  RcHm_v2.0_Chr2g0145631 158 EQLLNPCASAITGGNLTRVQHLLYVLHELASLTGDANHRLAAHGLRALTHHLSSnSSSSapnASASVgPVVTFSSTEPRFFQK---S 241
                             689*************************************************9932222000233332333333333333333...3 PP

                    GRAS  84 ...fsevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......... 153
                                f+evsP++ f + +aN+ Il+ ++ e    +++Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp ++iT++++ + +         
  RcHm_v2.0_Chr2g0145631 242 llkFYEVSPWFAFPNNIANSSILQVLADEpnraSTLHIVDIGVSHGMQWPTLLEALTRRPgGPPPLVKITVIAPFTVEndqnseapf 328
                             466***********************9999888899************************55566*******986655666666666 PP

                    GRAS 154 .skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                    +   rL  fA+++++++++n l  + l++l+ + ++ +++E+l+V+l+++lh+l +++ + e   +e+L+++++++Pk v
  RcHm_v2.0_Chr2g0145631 329 sIGPPGDNFSARLLGFAKSMNINLQINRLDNQPLQTLNSQVIDASSDETLIVCLQFRLHQLNHNTPPNER--TEFLNVLRNMEPKGV 413
                             6666778999******************9999*****************************966666555..*************** PP

                    GRAS 240 vvveqeadh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                             +++e+++++  ns ++F+++f++ +ey + ++ds++a +    + r + Er++++ e+ ++++++g++    +e +ekW er++e+G
  RcHm_v2.0_Chr2g0145631 414 ILSENNMECscNScGDFATGFSRQVEYLWRFLDSTSAAF----KGRESEERRVMEGEAAKALTNRGEM----NEGKEKWCERMKEVG 492
                             *****97764354259*******************8876....7777777777888899999999998....9************** PP

                    GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             F    ++e+a +  ++llrk++ ++++rv+e++g++ l Wk++p+ ++S W+
  RcHm_v2.0_Chr2g0145631 493 FVGEVFGEDAIDGGRALLRKYDsNWEMRVDEKDGCAGLWWKGQPVSFCSLWK 544
                             **********************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MTTNEVPQPN PTSEQILDWL EDSVSFFPSF LDDPYQSNGY QWWDETQDLI HANTNSVANN  60
ANIAVAENPV SPVTQLPSSD SSKKRKSPDG PVSETSSHID RKAKTGRPVN KAENDVKKAS  120
DEVATPPVKR ANGNKKGTGK GTGNNCNNGN SKEGRWAEQL LNPCASAITG GNLTRVQHLL  180
YVLHELASLT GDANHRLAAH GLRALTHHLS SNSSSSAPNA SASVGPVVTF SSTEPRFFQK  240
SLLKFYEVSP WFAFPNNIAN SSILQVLADE PNRASTLHIV DIGVSHGMQW PTLLEALTRR  300
PGGPPPLVKI TVIAPFTVEN DQNSEAPFSI GPPGDNFSAR LLGFAKSMNI NLQINRLDNQ  360
PLQTLNSQVI DASSDETLIV CLQFRLHQLN HNTPPNERTE FLNVLRNMEP KGVILSENNM  420
ECSCNSCGDF ATGFSRQVEY LWRFLDSTSA AFKGRESEER RVMEGEAAKA LTNRGEMNEG  480
KEKWCERMKE VGFVGEVFGE DAIDGGRALL RKYDSNWEMR VDEKDGCAGL WWKGQPVSFC  540
SLWKNGYQVS YD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-163GRAS family protein