PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0143351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 327aa MW: 36647.8 Da PI: 5.7634

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0143351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.4	1.3e-39	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l+++++e+am+++++++++ra+dPv G++++i++lq+ + RcHm_v2.0_Chr2g0143351 35 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDHHDKEEAMRTIIFQSDVRASDPVGGCYRIIQELQRLI 121 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 e kael+ + ++ RcHm_v2.0_Chr2g0143351 122 EYNKAELDIVLHQ 134 *****988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MSITSGSLVT RTSSPTTPNS SSSSSSTKGN GNTQACAACK YQRRKCAPDC ILAPYFPHDR 60 QRQFLNAHKL FGVSNITKII KHLDHHDKEE AMRTIIFQSD VRASDPVGGC YRIIQELQRL 120 IEYNKAELDI VLHQLAICRA QAQQQQQPIM QQIPEVGDTT CADQMISVDP LSLYGNPMHF 180 HYLQQQPNVQ VTGQQDQGAP YLFVQNTNGN NGHQQQHMVP EDMNMWAMQD SMSSLHIKHG 240 MNAGDCEDIK PFVDIACDDD QRNHEIKFQP DAIGDQSDEA LLKIEDGNLK EDQQSESAAQ 300 QVHHHYQDHG DLKGEATLFM TLTNCSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-49	LBD family protein