PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0140131
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91846.3 Da    PI: 6.4317
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0140131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  RcHm_v2.0_Chr2g0140131 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                            5679*****************************************************97 PP
2START1662.6e-521603672204
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++ +++l+v+ ++
  RcHm_v2.0_Chr2g0140131 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRTVDVLNVLPTA 245
                             7899******************************************************.**************************99 PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l +++l+a+++l+p  df+++Ry+  l++g++v++ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h
  RcHm_v2.0_Chr2g0140131 246 ngGTIELLYMQLYAPTTLAPaCDFWMLRYTSVLEDGSLVVCVRSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDH 332
                             99*************************************************9988899***************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                             +dl+   ++++lr+l++s+++ ++k+++a+l++++
  RcHm_v2.0_Chr2g0140131 333 MDLEPCGVPEVLRPLYESSAVLAQKMTMAALRQLR 367
                             *******************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MAMSCKDGKG VMDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYFRQHT  120
QTTTLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDLPSWL RDCRTVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPACDFW MLRYTSVLED GSLVVCVRSL KNTQNGPSMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPCGV PEVLRPLYES SAVLAQKMTM  360
AALRQLRQVA HEASQSSVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WSLMGNDGMD  420
DVTILINSSP DKLMGLNLSF GNGYPAVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYSAA AVKVGPCSLA GSRVGSFGGQ VILPLAHTIE HEEFLEVIKL EGIGHSPEDP  540
MMQTREMFLL QLCSGMDENA VGSCAELIFA PIDASFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLASA LEVGPTGNRA SSEYSANAGC VRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS QAGLRSPLGT PEAQTLARWI CNSYRGYLGV ELLKSGNEGS  720
ESNLKSLWHH SDAIMCCSLK AVPVFTFANQ AGLDMLETTL VALQDIALEK IFDDHGRKTL  780
FSEFPQIMQQ GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EDETAHCICF LFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein