PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0139721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 100aa MW: 10807.6 Da PI: 10.907 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.3 | 7.2e-22 | 19 | 63 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +i n sn qvtfskR +g++KKA+EL++LC++e+a+++fs+++k RcHm_v2.0_Chr2g0139721 19 KIPNRSNLQVTFSKRCAGLFKKASELCTLCGVEIAIVVFSPSNKP 63 588**************************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence |
MAMQIKKPSQ GRQKIAITKI PNRSNLQVTF SKRCAGLFKK ASELCTLCGV EIAIVVFSPS 60 NKPFSFGHPS IKTLIGRFLS PSPSSFPSST YSTSSVPQEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-32 | M-type_MADS family protein |