PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0134821
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 481aa    MW: 55212.7 Da    PI: 9.7376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0134821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.6e-1722108599
                             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                             l  +d+++   +++pkkf+ ++g++   s    l+ +sg +Wev+l  +++ g++++++GW eF k   L+ gDf+vF+++g+s f 
  RcHm_v2.0_Chr2g0134821  22 L--EDTSRDIKIRIPKKFVMKYGEDV--SNSAFLKLPSGSEWEVEL--TRCNGKVWFERGWPEFSKFCSLDYGDFLVFRYEGNSIF- 101
                             3..788888899**********8774..457***************..**********************************9999. PP

                             .EEEEE-S CS
                      B3  92 lvvkvfrk 99 
                               v +f++
  RcHm_v2.0_Chr2g0134821 102 -QVCIFDR 108
                             .9999997 PP
2B355.11.4e-172283051798
                             E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              +p kf++++ +k +    +tl+ ++g++W+vk++y+k++ r  l+ GW  Fvk+n Lk+gD++vF l+++ +  + v +fr
  RcHm_v2.0_Chr2g0134821 228 GFPVKFFKRNVIKDAD--NVTLRVSNGKTWSVKFKYEKSRAR--LQHGWLAFVKDNCLKVGDVCVFALIKDIKLLFQVEFFR 305
                             5799******777555..69999999********77777765..************************99855557777776 PP
3B341.91.8e-13382477396
                             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             +vl + +++++ + ++p +f++++   k+ +k+ ++ + ++r W v+li    ++++ ++ l +GW  F+++++Lk gD++vF+l++
  RcHm_v2.0_Chr2g0134821 382 TVLNTTYYTSLFMQSVPTSFIRQFI--KRLEKQTVMLQVKNRLWPVNLIPyaySNQRLSTKLCGGWIAFAREHDLKGGDVCVFELME 466
                             56777889999999*******9994..33445567777899*******653446666669999*********************998 PP

                             S.SEE..EEEE CS
                      B3  87 r.sefelvvkv 96 
                                +  l+v++
  RcHm_v2.0_Chr2g0134821 467 MkANIVLKVHI 477
                             43444455555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MGSFCRLQTF SSTTPHFFQI ILEDTSRDIK IRIPKKFVMK YGEDVSNSAF LKLPSGSEWE  60
VELTRCNGKV WFERGWPEFS KFCSLDYGDF LVFRYEGNSI FQVCIFDRTA TEIDYPITMP  120
DMEKTDHEDE EDDNISIEIS EDSPPHPKTR EKSPLPCPPS FKKMRTSWSG KAADTMFGND  180
GGGSSSARRY QKGTVEAIGE MHSLNKSEKA QALWRVDAFI SENPHFKGFP VKFFKRNVIK  240
DADNVTLRVS NGKTWSVKFK YEKSRARLQH GWLAFVKDNC LKVGDVCVFA LIKDIKLLFQ  300
VEFFRATSFP LLPGKNKRSK TSGKVAQRRC SSLRVPRVNL EAANKFIPNN PFFKVSLGAC  360
HMEKSNVVRT VTGNIFIYSL VTVLNTTYYT SLFMQSVPTS FIRQFIKRLE KQTVMLQVKN  420
RLWPVNLIPY AYSNQRLSTK LCGGWIAFAR EHDLKGGDVC VFELMEMKAN IVLKVHIFRC  480
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein