PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0129251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24514.3 Da    PI: 6.2578
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0129251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.2e-151057249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +i+nk     tfskRr+g++ KA+E + L +ae+a+++fs+ +++y +
  RcHm_v2.0_Chr2g0129251 10 KISNKNYLMATFSKRRKGLFHKASEFCRLSGAEIAIVVFSPGDRVYRF 57
                            7999999**************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MGRRKIEIEK ISNKNYLMAT FSKRRKGLFH KASEFCRLSG AEIAIVVFSP GDRVYRFGHP  60
SADSIIDRYD DPRTKNNNNK GTREFPYTLD DEGNEAHDDD LAGSKLGKEA ADGKDELGKA  120
RFWWDNLPIE DMGLKQLEQY KSCLEVIRNE LAYELHETKR RESHTKDFLS LIGFSTSTST  180
SDPVRERNCD IVEEHQAQLS WSSMTSAINP NFTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-31M-type_MADS family protein