PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0128901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 364aa MW: 39858.7 Da PI: 6.9742

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0128901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.2	2.5e-33	22	138	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 +g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ RcHm_v2.0_Chr2g0128901 22 TGRKDRHSKVVTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLAELppwhptgvaanatqgevpngagt 108 79**************************************************************88887777766665555544333 PP TCP 66 .......ssssaseceaesssssasnsssg...............k 89 + +s+ss g + RcHm_v2.0_Chr2g0128901 109 sdmvisaE----------QSESS------GynfqlqrqigdntdhN 138 33333220..........11111......11111222222222220 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MGMKSVGGEI VQVQGGHIVR STGRKDRHSK VVTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKTAID KLAELPPWHP TGVAANATQG EVPNGAGTSD MVISAEQSES 120 SGYNFQLQRQ IGDNTDHNES SFIPQSLDSD TIADTMKSFF PTSSAASTIN FQSYPSDIIS 180 RTTNLNPNQD LGLSLHSFQD HGLIHHTQQS HQDTTHHNDQ IQTLFAVPAT AGFDSSAYQR 240 MVAWSSDSSH ENRGFVFNNM PALPHQQALM GQQQSSSAAP TFAQRGTLQS SFTPSIRSWS 300 DEIQMASQRT QQHPVHHSSI FGTRFASDGL PVFCTPTRIH GDDADNSVVS DRPSSTSSPN 360 SNHH

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MGMKSVGGEI VQVQGGHIVR STGRKDRHSK VVTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKTAID KLAELPPWHP TGVAANATQG EVPNGAGTSD MVISAEQSES  120
SGYNFQLQRQ IGDNTDHNES SFIPQSLDSD TIADTMKSFF PTSSAASTIN FQSYPSDIIS  180
RTTNLNPNQD LGLSLHSFQD HGLIHHTQQS HQDTTHHNDQ IQTLFAVPAT AGFDSSAYQR  240
MVAWSSDSSH ENRGFVFNNM PALPHQQALM GQQQSSSAAP TFAQRGTLQS SFTPSIRSWS  300
DEIQMASQRT QQHPVHHSSI FGTRFASDGL PVFCTPTRIH GDDADNSVVS DRPSSTSSPN  360
SNHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	5e-75	TCP family protein