PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0121991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YB | ||||||||
Protein Properties | Length: 238aa MW: 27077.8 Da PI: 6.8856 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 179.3 | 3.5e-56 | 58 | 153 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+yl+ RcHm_v2.0_Chr2g0121991 58 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVHPLKLYLQ 144 89************************************************************************************* PP NF-YB 89 kyrelegek 97 kyrelegek RcHm_v2.0_Chr2g0121991 145 KYRELEGEK 153 ******996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MEDDNHGNNR LNGPNGGSPE NPCLNNSTPA SSCNSNINIH HNHNQSNNHN HHHHSSNKEQ 60 DRFLPIANVG RIMKKVIPGN GKISKDAKET VQECVSEFIS FVTGEASDKC QREKRKTING 120 EDIIWAITTL GFEDYVHPLK LYLQKYRELE GEKLNVPKQQ RLEQRLQQQQ QQQVVQQEQE 180 QQSIPNSYSV YSSTSLLSQP TSFITTHHHD PAFSLPFSPS SIQKQLQPQD QIDSVGHW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 1e-66 | NF-YB family protein |