PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0120331
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 282aa    MW: 31513.2 Da    PI: 6.43
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0120331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08148188954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  RcHm_v2.0_Chr2g0120331 148 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 188
                             699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDHTNYLDNQ LGNNLISAAG VHHDDHVGME DPIQLHHLHH HQISYDSVWP NFPLQLHHQV  60
PSSSSTHLHY DQFGHHEQLV LPGNYSNFMD QEDIQHEEEP EEEEELGAMK EMMYKIAAMQ  120
PVDIDPATIQ KPKRRNVRIS DDPQSVAARH RRERISEKIR ILQRLVPGGT KMDTASMLDE  180
AIRYVKFLKR QIRLLQQSSH HHPHQQCINV NAGILGTPSA STAAALAGGG GALDWLPPPM  240
PSSATSSSTE TPTTRPALGF RTFGGSRGDI AALSFNHEVL SD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-47bHLH family protein