PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0119181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 565aa    MW: 64129.4 Da    PI: 6.1443
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0119181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix902.6e-2853137187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW++qe+laL+++r++m+ +++++ +k+plWeevs+km e g++r +k+Ckek+en+ k++k+++e++ +r++++  t++yf+qlea
  RcHm_v2.0_Chr2g0119181  53 RWPRQETLALLKIRSDMDAEFKAATAKMPLWEEVSRKMGEAGYSRDAKKCKEKFENIYKYHKRTRETRCGRSAGK--TYKYFEQLEA 137
                             8********************************************************************986555..6*******85 PP
2trihelix94.21.2e-29388472186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW+++ev +Li++r++ + +++++ +k++lWee+s+ m++ g+ r++k+Ckekwen+nk+y+++k+++kkr +e+s+tc+y++ l+
  RcHm_v2.0_Chr2g0119181 388 RWPREEVEDLIKLRSNYDLQYQENGSKGHLWEEISASMKKLGYDRNAKRCKEKWENINKYYRRLKDSNKKR-PEDSKTCAYYNVLD 472
                             8*********************************************************************8.99*********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    
MLENSTLPAN PSSPASDRRA EEVAGDGGSV SVGLEEEERA GLEQGYRNWA GNRWPRQETL  60
ALLKIRSDMD AEFKAATAKM PLWEEVSRKM GEAGYSRDAK KCKEKFENIY KYHKRTRETR  120
CGRSAGKTYK YFEQLEAIEQ HHFEHIPPAE TVQAETAETA ATIPKDGVSH ALPPCSSIQH  180
QLSSFVDNST PTTSCSSKES EGTHKKKRRV TEFFEKLMKQ VIDKQENLQT KFVEVMDKYE  240
QDRVAREEAW KMQEMARIER EREQLAQERS VAAAKDSAVL AFLQKFSEQA ASVHMPPGQA  300
CSVQIPNQPS SVQLPMQACS VQLPNQSSSV QLPVQASAVR VQMPDNSPLA NTVTDKQKKD  360
EDWERLHRSL ERPDKNNGRS HTPIGSTRWP REEVEDLIKL RSNYDLQYQE NGSKGHLWEE  420
ISASMKKLGY DRNAKRCKEK WENINKYYRR LKDSNKKRPE DSKTCAYYNV LDALYNKKTS  480
RAENQVDSNY ELRPEELLMH MMSGQEEQQQ PESVTQNGDG DNVEKIQEDN GNGEGVGDVA  540
GDGYRIVAAN PSPMEQDNPS VAIMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KKKRR
2205210KKKRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-42Trihelix family protein