PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0118791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRAS | ||||||||
Protein Properties | Length: 207aa MW: 24033.3 Da PI: 8.3664 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 53.6 | 4.4e-17 | 6 | 153 | 161 | 309 |
GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.. 245 +g+rL++f e++++ f f+ +++ + e ++ +++v +a++ n++++ +++++s sl + ++L + +lsPk++v+v++e RcHm_v2.0_Chr2g0118791 6 LGRRLKEFSESINLLFIFDQMMMATEE--DFAKIEVVA-DAIVANCMIHQLHMPSRSISLMK---AFLGGMSKLSPKLIVLVQEElf 86 699*****************7555444..469998876.67888999988889988888888...********************75 PP GRAS 246 ..adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerh 309 ++ s F+e f+eal++y +l d l ++++ e + +E+e+lg +i + v + e++ r+ RcHm_v2.0_Chr2g0118791 87 nfSKKPSMVFAEFFSEALHHYNSLCDFLVTSFSGEYkMGLRQIEKEVLGIKILESVRQFPCEKEDRM 153 433445669*******************88887776356689************9998777754444 PP | |||||||
2 | GRAS | 22.2 | 1.5e-07 | 163 | 192 | 344 | 373 |
GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++gy v++e+g l l+Wk+rpL+++S W RcHm_v2.0_Chr2g0118791 163 KGFKGYWVQHEKGRLALCWKSRPLTTASIW 192 4488************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MFCTPLGRRL KEFSESINLL FIFDQMMMAT EEDFAKIEVV ADAIVANCMI HQLHMPSRSI 60 SLMKAFLGGM SKLSPKLIVL VQEELFNFSK KPSMVFAEFF SEALHHYNSL CDFLVTSFSG 120 EYKMGLRQIE KEVLGIKILE SVRQFPCEKE DRMLWEDCFA SLKGFKGYWV QHEKGRLALC 180 WKSRPLTTAS IWVPLTYKIK KNYVNPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 7e-13 | GRAS family protein |