PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0117181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 120aa MW: 13629.2 Da PI: 9.7014 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.5 | 3.8e-07 | 17 | 83 | 21 | 88 |
FAR1 21 kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++k + ei++ f+ k+gk++ +++ + r+ + + gC+ k +v++++ d+ +++t+ e HnH+ RcHm_v2.0_Chr2g0117181 17 RTKSELEIMDDGFKWRKYGKKSVKNSP--NPRNYYKCSSAGCDVKKRVERDReDSSYVITTYEGMHNHD 83 456678899999********9998877..8999999**************9999**************7 PP | |||||||
2 | WRKY | 98.7 | 3.7e-31 | 25 | 83 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+sagC vkk+ver++ed ++v++tYeg Hnh+ RcHm_v2.0_Chr2g0117181 25 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSAGCDVKKRVERDREDSSYVITTYEGMHNHD 83 69********************************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence |
MKNSKREGGH GHRVAFRTKS ELEIMDDGFK WRKYGKKSVK NSPNPRNYYK CSSAGCDVKK 60 RVERDREDSS YVITTYEGMH NHDTPNCVQL QFNPAALVVD VDPNNVWTTL RASSQSSASS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 6e-42 | WRKY family protein |