PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0117181
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 120aa    MW: 13629.2 Da    PI: 9.7014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0117181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.53.8e-0717832188
                    FAR1 21 kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88
                            ++k + ei++  f+  k+gk++ +++   + r+  + +  gC+ k +v++++ d+ +++t+ e  HnH+
  RcHm_v2.0_Chr2g0117181 17 RTKSELEIMDDGFKWRKYGKKSVKNSP--NPRNYYKCSSAGCDVKKRVERDReDSSYVITTYEGMHNHD 83
                            456678899999********9998877..8999999**************9999**************7 PP

2WRKY98.73.7e-312583159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                            +dDg++WrKYG+K+vk+s++pr+YY+C+sagC vkk+ver++ed ++v++tYeg Hnh+
  RcHm_v2.0_Chr2g0117181 25 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSAGCDVKKRVERDREDSSYVITTYEGMHNHD 83
                            69********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MKNSKREGGH GHRVAFRTKS ELEIMDDGFK WRKYGKKSVK NSPNPRNYYK CSSAGCDVKK  60
RVERDREDSS YVITTYEGMH NHDTPNCVQL QFNPAALVVD VDPNNVWTTL RASSQSSASS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.16e-42WRKY family protein