PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0116041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27294 Da PI: 9.629 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdell ++++++G g W+ ++ + g++R++k+c++rw++yl RcHm_v2.0_Chr2g0116041 8 KGAWTKEEDELLRQVIEKHGEGKWHQVPFKAGLNRCRKSCRLRWLNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T +E + +++++k+lG++ W++I+ +++ gRt++++k++w++y RcHm_v2.0_Chr2g0116041 61 RGEFTVDEVDMIIRLHKLLGNR-WSLISGRLP-GRTANDVKNYWNTY 105 899*******************.*********.************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MEGFGVRKGA WTKEEDELLR QVIEKHGEGK WHQVPFKAGL NRCRKSCRLR WLNYLKPNIK 60 RGEFTVDEVD MIIRLHKLLG NRWSLISGRL PGRTANDVKN YWNTYQRKKN QKMTSGAKKM 120 KDKSQKNTIA PLVVRPRPRT FIKSLNFLER DANLEHIHSE ENSSTSLPTA PPQTLELENV 180 IDWWKVVSED STGSIDRTTC SSLGLEDDFF TNFWVEDMVQ LSTIDGHDLV NNFYA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-62 | MYB family protein |