PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0113351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | CAMTA | ||||||||
Protein Properties | Length: 1070aa MW: 120253 Da PI: 5.4529 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179.6 | 3.9e-56 | 20 | 136 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 l+ k+rwl++ ei++iL+n++k+++++e++++p+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+ RcHm_v2.0_Chr2g0113351 20 LEAKHRWLRPAEICEILQNYKKFHISSEPASTPPGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHG 106 6679*********************************************************************************** PP CG-1 89 eenptfqrrcywlLeeelekivlvhylevk 118 e+n++fqrr+yw+Lee+l++ivlvhy+evk RcHm_v2.0_Chr2g0113351 107 EDNENFQRRSYWMLEEDLSHIVLVHYREVK 136 ***************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1070 aa Download sequence |
MSDTKRYGLG NQLDIQQILL EAKHRWLRPA EICEILQNYK KFHISSEPAS TPPGGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEDNE NFQRRSYWML 120 EEDLSHIVLV HYREVKGNRT NFNHVKETEG IPYSNGAEEI ARQSEMENSV SSSFNPSSYQ 180 MHSQVTDATS LSSAQASEFE DAESAFYNQA SSRLQPVAEK INSEFSDAYY PAFSNDFQEK 240 LSTIPGVDFS SLSQAYKRED SIDAGDIYEP RKDREFALWD DMENSAAGIQ SFQSSFSATH 300 SDTMGSFPKI ETIGHLYTDS FDKRVVYGTE NRPKVQQSWQ TSEGSSNWPM DQSLQSHTEY 360 NVTAKLDEGA DTTDLLKSLG PFLVDSDKQH DLQFHLSHAD TISKRNDNIE GKADHPSAIK 420 PLLGFDDGLK KLDSFNRWMS KELEDVDEPQ MQSSSGAYWE TVESENEVDE SSVPLQVRLD 480 SYMLGPSLSH DQLFSIVDFS PNWAYENSEI KVLITGKFLK SQHAESCKWS CMFGEVEVPA 540 EVIADGVLRC YTPIHKAGRV PFYVTCSNRL ACSEVREFEY RVAQIQDVDS KDYYSDCSNE 600 TLSMRFGKLL SLSSTSPNCD SASTAENSEL TAKITSMLKN DNDEWDKMLQ LTSDEDFSLE 660 RVEDQLLQQL LKEKLHAWLL QKLAAGGKGP SVLDEGGQGV LHFGAALGYD WVLLPTITAG 720 VSVNFRDVNG WTALHWAAFC GRERTVASLI SLGAAPGALT DPTTKYPSGE TPADLASEQG 780 HKGIAGYLAE SALSAHLESL NLDLKNGNSA ETSGTKAVSG SSRDGELTDG LSLRDSLTAV 840 CNATQAAARI HQVFRVQSFQ RKQLKEYDGD KFGFSNERAL SLIALKSHKA GKRDEHVDAA 900 AVRIQNKFRS WKGRKDYLII RQRIVKIQAH VRGHQVRKNY RKIVWSVGIV EKIILRWRRK 960 GSGLRGFKPE PVTEGPSMQV SSTKDDDYDV LKEGRKQTEE RLQKALARVK SMVQYPEARD 1020 QYHRLLNVVT EIQETKVLNS SEGTSTYMDD DLIDIEALFD DDVLMPTAAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | CAMTA family protein |