PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0113351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family CAMTA
Protein Properties Length: 1070aa    MW: 120253 Da    PI: 5.4529
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0113351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.63.9e-56201362118
                    CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 
                             l+ k+rwl++ ei++iL+n++k+++++e++++p+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+
  RcHm_v2.0_Chr2g0113351  20 LEAKHRWLRPAEICEILQNYKKFHISSEPASTPPGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHG 106
                             6679*********************************************************************************** PP

                    CG-1  89 eenptfqrrcywlLeeelekivlvhylevk 118
                             e+n++fqrr+yw+Lee+l++ivlvhy+evk
  RcHm_v2.0_Chr2g0113351 107 EDNENFQRRSYWMLEEDLSHIVLVHYREVK 136
                             ***************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    
MSDTKRYGLG NQLDIQQILL EAKHRWLRPA EICEILQNYK KFHISSEPAS TPPGGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
EEDLSHIVLV HYREVKGNRT NFNHVKETEG IPYSNGAEEI ARQSEMENSV SSSFNPSSYQ  180
MHSQVTDATS LSSAQASEFE DAESAFYNQA SSRLQPVAEK INSEFSDAYY PAFSNDFQEK  240
LSTIPGVDFS SLSQAYKRED SIDAGDIYEP RKDREFALWD DMENSAAGIQ SFQSSFSATH  300
SDTMGSFPKI ETIGHLYTDS FDKRVVYGTE NRPKVQQSWQ TSEGSSNWPM DQSLQSHTEY  360
NVTAKLDEGA DTTDLLKSLG PFLVDSDKQH DLQFHLSHAD TISKRNDNIE GKADHPSAIK  420
PLLGFDDGLK KLDSFNRWMS KELEDVDEPQ MQSSSGAYWE TVESENEVDE SSVPLQVRLD  480
SYMLGPSLSH DQLFSIVDFS PNWAYENSEI KVLITGKFLK SQHAESCKWS CMFGEVEVPA  540
EVIADGVLRC YTPIHKAGRV PFYVTCSNRL ACSEVREFEY RVAQIQDVDS KDYYSDCSNE  600
TLSMRFGKLL SLSSTSPNCD SASTAENSEL TAKITSMLKN DNDEWDKMLQ LTSDEDFSLE  660
RVEDQLLQQL LKEKLHAWLL QKLAAGGKGP SVLDEGGQGV LHFGAALGYD WVLLPTITAG  720
VSVNFRDVNG WTALHWAAFC GRERTVASLI SLGAAPGALT DPTTKYPSGE TPADLASEQG  780
HKGIAGYLAE SALSAHLESL NLDLKNGNSA ETSGTKAVSG SSRDGELTDG LSLRDSLTAV  840
CNATQAAARI HQVFRVQSFQ RKQLKEYDGD KFGFSNERAL SLIALKSHKA GKRDEHVDAA  900
AVRIQNKFRS WKGRKDYLII RQRIVKIQAH VRGHQVRKNY RKIVWSVGIV EKIILRWRRK  960
GSGLRGFKPE PVTEGPSMQV SSTKDDDYDV LKEGRKQTEE RLQKALARVK SMVQYPEARD  1020
QYHRLLNVVT EIQETKVLNS SEGTSTYMDD DLIDIEALFD DDVLMPTAAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0CAMTA family protein