PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr2g0113261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 151aa MW: 18004.8 Da PI: 8.5801 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 138.3 | 2.5e-43 | 19 | 131 | 1 | 118 |
CG-1 1 llkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 ll+ k+rwl++ ei ++L+n++++ +e++++p+s + ++ + frkDGy wkk kdgk+v+E+he+LK ggve+l+cyYah RcHm_v2.0_Chr2g0113261 19 LLQAKHRWLRPAEIFEVLQNHSRFC-LSEPADKPSS---MTFDCICMS-FRKDGYRWKKTKDGKAVKEAHERLKAGGVEALHCYYAH 100 56789******************98.5688888876...557877777.************************************** PP CG-1 88 seenptfqrrcywlLeeelekivlvhylevk 118 +een++fqrrcyw++ee l++ivlvhy+evk RcHm_v2.0_Chr2g0113261 101 GEENENFQRRCYWMIEEPLSHIVLVHYREVK 131 ****************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence |
MAARKRQRLD DQLELPQILL QAKHRWLRPA EIFEVLQNHS RFCLSEPADK PSSMTFDCIC 60 MSFRKDGYRW KKTKDGKAVK EAHERLKAGG VEALHCYYAH GEENENFQRR CYWMIEEPLS 120 HIVLVHYREV KVTHPSYSVP NYLLCFLYQL F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22300.2 | 2e-49 | CAMTA family protein |