PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0113081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | CAMTA | ||||||||
Protein Properties | Length: 130aa MW: 15439.6 Da PI: 9.7167 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 118 | 4.7e-37 | 4 | 89 | 31 | 116 |
CG-1 31 ktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 +r gsl+L +rkkv+++++DG++w+kkkdgktv E ekLKvg v l cyYa +een++f+rr+y +Lee+l++ivlvhy+e RcHm_v2.0_Chr2g0113081 4 SQRLLGGSLFLVDRKKVKHYKRDGHNWRKKKDGKTVMEGNEKLKVGHVHKLRCYYAPGEENKNFKRRIYSMLEEDLKHIVLVHYRE 89 577889******************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence |
MAESQRLLGG SLFLVDRKKV KHYKRDGHNW RKKKDGKTVM EGNEKLKVGH VHKLRCYYAP 60 GEENKNFKRR IYSMLEEDLK HIVLVHYREE ESTSGVLLFN GTFLWHVYLL GMENNHESET 120 NGMGEERNRY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 34 | RKKVKHYKRDGHNWRKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 2e-34 | CAMTA family protein |