PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0110101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21891.8 Da PI: 10.6074 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.5 | 4.7e-25 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n + rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye RcHm_v2.0_Chr2g0110101 10 RIDNCTSRQVTFSKRRKGLIKKAKELAILCDAEVGLLIFSSTGKLYEC 57 8*********************************************95 PP | |||||||
2 | K-box | 60.7 | 6e-21 | 59 | 133 | 17 | 91 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +++e++ L+++++nL++++R+++Ge+L+ L++keL+ Le+qLe sl+ iR kK +++++q el kk +l+ ++ RcHm_v2.0_Chr2g0110101 59 SNREVTLLREQLQNLRENHRQFMGEQLGGLTIKELKGLENQLEISLQGIRLKKGNFIHQQNMELYKKVINLSFQE 133 5789****************************************************************9997544 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence |
MGRGKIVIRR IDNCTSRQVT FSKRRKGLIK KAKELAILCD AEVGLLIFSS TGKLYECASN 60 REVTLLREQL QNLRENHRQF MGEQLGGLTI KELKGLENQL EISLQGIRLK KGNFIHQQNM 120 ELYKKVINLS FQEKLELKKK NIYSALVRTC NFRLMELKIP SFINSYGFHN FLIQTHRQEI 180 IRPHYLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-56 | MIKC_MADS family protein |