PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0109981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23212 Da PI: 6.5227 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.1 | 3e-20 | 13 | 62 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie s rqvtfskRr+g++ KAe S C+ae+avi+fs+t ++ye+ss RcHm_v2.0_Chr2g0109981 13 KIEHLSSRQVTFSKRRKGLFNKAEDFSLRCGAEIAVIVFSNTKRMYEFSS 62 79999*******************************************96 PP | |||||||
2 | K-box | 35.3 | 4.8e-13 | 100 | 154 | 18 | 72 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 + L++ei+ L +l G +L+ +sl+eL++Le+++ ++++++ ++Kne+ RcHm_v2.0_Chr2g0109981 100 LSAIGLLQEEIRALNLDCSRLTGTELDGMSLRELNELEKKIREGIESVEKRKNEV 154 4566789********999***********************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MAMSGPRRTK IEKIEHLSSR QVTFSKRRKG LFNKAEDFSL RCGAEIAVIV FSNTKRMYEF 60 SSTSMEHILS RYNKERAAGF LIESPENKSQ HEPSSSSDSL SAIGLLQEEI RALNLDCSRL 120 TGTELDGMSL RELNELEKKI REGIESVEKR KNEVQNYYQP SYMLEDSNRL DGNNSNFFSG 180 TSSSAISGCT ESEQSKQFVD TCLHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 2e-30 | MIKC_MADS family protein |