PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0109191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31003.8 Da    PI: 8.3072
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0109191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18127181256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  RcHm_v2.0_Chr2g0109191 127 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTK 181
                             788899***********************************************98 PP
2HD-ZIP_I/II125.72e-40127216191
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+keq++lLEesF+++++L+p++K++lar+L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eL
  RcHm_v2.0_Chr2g0109191 127 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQEL 213
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reel 91 
                             + +l
  RcHm_v2.0_Chr2g0109191 214 K-AL 216
                             9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MGFDDPHACN TGLVLGLGLT ASQESTSPTP QKAHHQMNPM LKKPNSFEPS LTLGLFGNSF  60
HEDDHQGNSL DLYRQGSPHN SHSAVSNSFS SGRVVKRERD LSSEEVEVEK VSSRVISDED  120
EDGPNARKKL RLTKEQSALL EESFKQHSTL NPKQKQALAR QLSLRPRQVE VWFQNRRART  180
KLKQTEVDCE FLKKCCETLT DENRRLQKEV QELKALKLSQ QQPLFMHMPA ATLTMCPSCE  240
RIGGVGSEGA NSNKSPFSIA HTKPHFYNPF TNSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-95HD-ZIP family protein