PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0107531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 463aa    MW: 51822.3 Da    PI: 5.9027
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0107531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.92.3e-94584602373
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalkl..fs 85 
                             ++lL++cA+a++++d++laq++L+ l+++a pdgd++qRla  f++AL ar ars+s +l +a+++ +++   +++++++ +l  f 
  RcHm_v2.0_Chr2g0107531  58 EQLLVHCANAIETNDATLAQQILWVLNNIAPPDGDSNQRLACAFLRALIARAARSGSlKLLAAMNAAQANLAIHTHKFSVIELagFI 144
                             79****************************************************5442677777888877666888888888899** PP

                    GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLa 166
                             +++P+++f++ +aN+ Ileaveg + +Hi+D+++++++Q p+L +a+asR+     pp l++T+ g  e +      ++ee+g++L 
  RcHm_v2.0_Chr2g0107531 145 DLTPWHRFGFTAANSVILEAVEGYSVIHIVDLSLTHCMQIPTLVDAIASRQdglTTPPLLKLTVAGTTEDVppmLDLSYEELGSKLV 231
                             ***************************************************65556***********887798888999******** PP

                    GRAS 167 kfAeelgvpfefnvl.......vakrledleleeLrvkp.......gEalaVnlvlqlhrll...............desvsleser 224
                             +fA++ ++ +ef+v+        a+      +e+Lrv++       +Eal++n++++lh+++               + ++s++s r
  RcHm_v2.0_Chr2g0107531 232 NFARSRNIILEFRVIpssytdgFANL-----IEQLRVQNlvypesgHEALVINCHMMLHYIPeetfqnfepcsssstSITTSSSSLR 313
                             ***************88844444444.....555555555555699***************************99875555566688 PP

                    GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                             + +Lk+v++l P+vvvvv+++ad++s++++ r+ +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a eg++r+er e 
  RcHm_v2.0_Chr2g0107531 314 SMFLKAVRGLDPTVVVVVDEDADLTSNDLVGRLRSAFNYLWIPYDTIDTFLPRGSKQRQWYEAD-MCWKIENVIAYEGFQRVERLEP 399
                             8***************************************************************.9********************* PP

                    GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                             + +W +r+++aGF++v+++ +a++++k++l +++  g+ ++ e++ lvl+Wk++++v+++aW
  RcHm_v2.0_Chr2g0107531 400 KCRWVQRMRSAGFRSVSFGVEAVNEVKAMLDEHA-AGWGLKREEEDLVLTWKGHNVVFATAW 460
                             **********************************.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    
MMQFTETPPQ PLHQIVTTPP FSPNLPIMNK NQTHRTRPWP GFPTSSKLTN FGDANCMEQL  60
LVHCANAIET NDATLAQQIL WVLNNIAPPD GDSNQRLACA FLRALIARAA RSGSLKLLAA  120
MNAAQANLAI HTHKFSVIEL AGFIDLTPWH RFGFTAANSV ILEAVEGYSV IHIVDLSLTH  180
CMQIPTLVDA IASRQDGLTT PPLLKLTVAG TTEDVPPMLD LSYEELGSKL VNFARSRNII  240
LEFRVIPSSY TDGFANLIEQ LRVQNLVYPE SGHEALVINC HMMLHYIPEE TFQNFEPCSS  300
SSTSITTSSS SLRSMFLKAV RGLDPTVVVV VDEDADLTSN DLVGRLRSAF NYLWIPYDTI  360
DTFLPRGSKQ RQWYEADMCW KIENVIAYEG FQRVERLEPK CRWVQRMRSA GFRSVSFGVE  420
AVNEVKAMLD EHAAGWGLKR EEEDLVLTWK GHNVVFATAW MLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-169GRAS family protein