PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0106361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 314aa MW: 34188.8 Da PI: 10.0053 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.1 | 5.5e-31 | 243 | 300 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYe eHnh+ RcHm_v2.0_Chr2g0106361 243 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEAEHNHS 300 99************************988****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence |
MAVDFMGYRN FSAKLEENAV VQEAASGLES VEKLIRLLSS QQKQEKYHSM DMDCTAVADV 60 AVSKFKKVIS LLGRTRTGHA RFRRAPLPFT APPQESVNPI DSSSTRVYHA TPIQQIPAPV 120 VMHHHGSGME GTKDSSTTIN FSSYSSAATT SFMSSLTGDS DSKQPMSSSA FQITNMSQVS 180 SAGKPPLSSA SLKRKCSSDT LGSGKCGASS SGRCHCSKKR KLRLKRVVRV PAISLKMADI 240 PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RALDDPSMLV VTYEAEHNHS 300 LNIAEASNLI LESS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 2e-77 | WRKY family protein |