PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103541
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 511aa    MW: 57844.9 Da    PI: 9.1385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.3e-13451201798
                             E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              +pkkf+ ++g++     t+ l+ +sg +Wev+l   +++g+ +++kGW eF +   L+ g f+vF+++g+s+f     +f+
  RcHm_v2.0_Chr2g0103541  45 KIPKKFLIKYGED--LLNTVCLKLPSGSEWEVEL--IRCKGKAWFEKGWPEFSRFCCLDCGNFLVFRYEGNSTF--EACIFD 120
                             59********977..778****************..99999999**************************9999..666666 PP
2B350.83e-16265355187
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.....-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-E CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.....rsWevkliy.rkksgryvltkGWkeFvkangLkegDf 79 
                             ffk+ +++++  +++l+lp +f ++h  +++       tl+ +sg     ++W+vk++y   +s++ +l  GW+ Fv++n+Lk++D+
  RcHm_v2.0_Chr2g0103541 265 FFKISMKPSNIHKSILSLPSEFSKRHliKLPAGI---ATLQVSSGrtssvKTWSVKFKYdFENSKAQLLN-GWSAFVRDNNLKVRDV 347
                             99************************87555433...5555566666899*********64555555555.**************** PP

                             EEEEE-SS CS
                      B3  80 vvFkldgr 87 
                             + F l++r
  RcHm_v2.0_Chr2g0103541 348 CGFILMDR 355
                             ***98765 PP
3B3512.6e-16422506998
                             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             +  ks ++++p  f++++ ++   ++tl+l+  + rsW vk+i r ++++  +++GW  F+k+ngL+ gD+++F+l++ ++  l+v+
  RcHm_v2.0_Chr2g0103541 422 HKEKS-NVSVPAAFVKSFIKEA--NQTLKLQV-KDRSWPVKVI-RFGKNSAKFSGGWAAFAKENGLEKGDVCIFELMEINDIVLKVH 503
                             44445.59*******9995443..44677554.66*******5.555556679***********************98899999999 PP

                             EE- CS
                      B3  96 vfr 98 
                             +fr
  RcHm_v2.0_Chr2g0103541 504 IFR 506
                             997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    
MVSPGQQTFC ATTPHFFKVI LDDNSRDLKL VIVPLFLGTH FVVQKIPKKF LIKYGEDLLN  60
TVCLKLPSGS EWEVELIRCK GKAWFEKGWP EFSRFCCLDC GNFLVFRYEG NSTFEACIFD  120
RTATEIDYPI TVPKIYEDEN DDLSIEILEF PPCPKTREKP SLLYPDYPLC KKMRPSSSTR  180
SDRISENESA QPDSMVLFEK SMPNKDSHCS NSEMKGKGDF LAKKNTAGGS SCTPRFLKQT  240
VDHEVIENAI AHQRATAFKL DDNPFFKISM KPSNIHKSIL SLPSEFSKRH LIKLPAGIAT  300
LQVSSGRTSS VKTWSVKFKY DFENSKAQLL NGWSAFVRDN NLKVRDVCGF ILMDRIELLF  360
EVALPNVEAP NFPSPPVKKP IISGQVTHWP SSSLRDSRVN LEAGNKFVPK NPYFLVTLGS  420
LHKEKSNVSV PAAFVKSFIK EANQTLKLQV KDRSWPVKVI RFGKNSAKFS GGWAAFAKEN  480
GLEKGDVCIF ELMEINDIVL KVHIFRCRLK I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-28B3 family protein