PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103521
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 430aa    MW: 48817 Da    PI: 8.1655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.4e-1717107299
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             fk+   +d+++++ l +pkkf+ ++g++   s  + l+ +sg +Wev+l  +++ g+ ++++GW eF +   L+ g f+vF+++g+s
  RcHm_v2.0_Chr2g0103521  17 FKII-LEDTSREHKLKIPKKFMIKYGED--LSNSVCLKLPSGSEWEVEL--TRCNGKAWFERGWPEFSRFCSLNYGTFLVFRYEGNS 98 
                             5544.478888899***********977..8889***************..999999****************************99 PP

                             EE..EEEEE-S CS
                      B3  89 efelvvkvfrk 99 
                              f   v +f++
  RcHm_v2.0_Chr2g0103521  99 HF--EVCIFDT 107
                             99..9999986 PP
2B362.28.4e-20282372395
                             EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             k  +++++   g ++lp +fa++h  +++       +l+ ++gr+W+v ++y  k+s++ + ++GW++Fv++n+Lk+gD++vF l++
  RcHm_v2.0_Chr2g0103521 282 KMAMQPSHIHGGTISLPYEFAKRHliKLPAG---IAILRVSDGRTWSVMFKYdHKNSKARLWRSGWSSFVRDNNLKVGDVCVFVLID 365
                             6678899999999***********7655533...588899************8777888899**********************985 PP

                             SSEE..EEE CS
                      B3  87 rsefelvvk 95 
                               + +l + 
  RcHm_v2.0_Chr2g0103521 366 --CNKLSFE 372
                             ..4444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    
MGSLGRKIFC AITPHFFKII LEDTSREHKL KIPKKFMIKY GEDLSNSVCL KLPSGSEWEV  60
ELTRCNGKAW FERGWPEFSR FCSLNYGTFL VFRYEGNSHF EVCIFDTSAT EIDYPLTIPK  120
IEEADEDDLS IDISEDLPPC PKSRENSSSL CPRKKMRTSL SGKLDMISEN GNTQPYDMVV  180
LEKPVTNKDS HCSKAEIKSK EYISSVLPQF VHLMPSQVTC FAPLGETDFA TKTDGGCFSR  240
PERFPKQTCH ENLGRMKPLT TTEKAIALQR ANAFKSDKPS FKMAMQPSHI HGGTISLPYE  300
FAKRHLIKLP AGIAILRVSD GRTWSVMFKY DHKNSKARLW RSGWSSFVRD NNLKVGDVCV  360
FVLIDCNKLS FEVFFYPTIE ATNCRFSPGY GRGAIVQVEE KKRPIFEAES NMNCEIGVST  420
SIEVDKSTRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-24B3 family protein