PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0103461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 461aa MW: 52107.8 Da PI: 8.5189 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.6 | 2e-17 | 21 | 117 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k + s++ ++ +l +p ++++++ ++ ke sk + l+ + g +Wev++ +++ g+++++kGW++F+k L+++D++ F+++ RcHm_v2.0_Chr2g0103461 21 FIKFISESSSKET-NLKVPTSYVKKYqeKYGKELSKVVHLKLPCGTEWEVEV--TGHNGHFWFEKGWEDFCKFYSLQSRDSLAFQYE 104 5565555555555.5***********9977789*******************..********************************9 PP SSSEE..EEEEE-SS CS B3 86 grsefelvvkvfrks 100 +s+f +v +f+ks RcHm_v2.0_Chr2g0103461 105 ANSRF--KVNIFDKS 117 99999..9*999985 PP | |||||||
2 | B3 | 44.4 | 3e-14 | 221 | 316 | 8 | 99 |
-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 8 sdvlksgrlvlpkkfaeeh....ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++ k +l+l+ + ++ g ++ ++ ++l+ ++g W+v+++y+ + ++ l++GW++Fv+ n+L++gD++ F+l+++ RcHm_v2.0_Chr2g0103461 221 ASYIKGTMLWLSTEISMNMltylG-QNSGN--VSLRVSEGstrGLWTVEMKYDTERATFRLQSGWNKFVQGNNLNAGDVCGFMLIDE 304 555555556666555433366543.33344..4555544444589****************************************99 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + + v +fr+ RcHm_v2.0_Chr2g0103461 305 IGLLFEVNIFRR 316 777789999987 PP | |||||||
3 | B3 | 46.7 | 5.7e-15 | 363 | 448 | 9 | 96 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ ++ +l+l +f ++h ++k+++ l + g +W v l+y+ +++r +++GW +Fv++n+L+ gD +vF l++++ f++ v RcHm_v2.0_Chr2g0103461 363 SSISH-CLWLCSRFSQKHLSDKPSN--AELHVPGGtTTWCVGLKYEVGRKRAKFQSGWTKFVRDNNLNIGDECVFVLTDENIFSFEV 446 33444.5***********7776665..7777777779***************************************99878777766 PP EE CS B3 95 kv 96 + RcHm_v2.0_Chr2g0103461 447 VI 448 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence |
MTSLCRKNDS RPKFSATKFS FIKFISESSS KETNLKVPTS YVKKYQEKYG KELSKVVHLK 60 LPCGTEWEVE VTGHNGHFWF EKGWEDFCKF YSLQSRDSLA FQYEANSRFK VNIFDKSKTE 120 IDYPIKSPDM QENGVNDHSP PASPPLPQKK KEATSSGGKK DLSAEKDEGG KSSTTQRSQK 180 PTTEVPMRMH SSAIGGKATA LQRAKEFKSR NPSCFLVIMH ASYIKGTMLW LSTEISMNML 240 TYLGQNSGNV SLRVSEGSTR GLWTVEMKYD TERATFRLQS GWNKFVQGNN LNAGDVCGFM 300 LIDEIGLLFE VNIFRRTEVA TSSPGYDEYD VDDKDDHGLH DANDDYAADE NRHRSFRTVL 360 LKSSISHCLW LCSRFSQKHL SDKPSNAELH VPGGTTTWCV GLKYEVGRKR AKFQSGWTKF 420 VRDNNLNIGD ECVFVLTDEN IFSFEVVIVA AKSTLPPGKF C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-25 | B3 family protein |