PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 703aa    MW: 80682.1 Da    PI: 6.7494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-1427115999
                             HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                      B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                               + ++ l +p+ +++++  +++ke sk++ l+ + g +W+v++  + ++g+++++kGW++F k   L+++ ++ F+++g+s+f  +
  RcHm_v2.0_Chr2g0103451  27 EDSPTAYLKIPRIYLKKCreKYEKELSKDIHLKLPCGTEWKVEV--TEHKGHFWFEKGWEDFFKFYSLQSNGSIDFQYEGNSRF--K 109
                             445567799***********9999********************..**********************************9999..9 PP

                             EEEE-S CS
                      B3  94 vkvfrk 99 
                             vk+++k
  RcHm_v2.0_Chr2g0103451 110 VKIYDK 115
                             999987 PP
2B349.57.8e-16215315399
                             EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              v+++s++ k ++l+l+ +  +++  +++k++   ++l+ ++g   r W v+++y+  + r+ l++GW++Fv+ n+L++gD++ F+l
  RcHm_v2.0_Chr2g0103451 215 LVTMHSSYIKGHMLWLSTEISKNMltNLSKNS-GNVSLRVSEGstrRYWAVEMKYDIERARFRLQSGWNKFVQGNKLNAGDVCGFML 300
                             5678999********99998866698555544.377777777777899*************************************** PP

                             -SSSEE..EEEEE-S CS
                      B3  85 dgrsefelvvkvfrk 99 
                             +++ e  + v +fr+
  RcHm_v2.0_Chr2g0103451 301 IDKIELLFEVNIFRR 315
                             *98666688888887 PP
3B347.14.4e-15355447196
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f k+ +++++ +++ l+l  +f ++h ++++++ +l +   +  +W v l+y+ +++r  +++GW +Fv++n+Lk  D +vF l+++
  RcHm_v2.0_Chr2g0103451 355 F-KKVLQKSAINHC-LWLCSRFSQKHLSNNPSNAELHVPG-RTTTWHVGLKYEVGRKRAKFQSGWTKFVRDNNLKIEDECVFVLTDE 438
                             4.455588888888.***********66666766666555.779****************************************999 PP

                             SEE..EEEE CS
                      B3  88 sefelvvkv 96 
                             ++f++vv v
  RcHm_v2.0_Chr2g0103451 439 NTFSFVVIV 447
                             999888866 PP
4B341.23e-13610702299
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             + ++ + dvl+   l lp +fa++h  k  ++  ++l+ ++g+ W+vk+ +   ++   +++GW eFv+  +Lke D++ F+l++++
  RcHm_v2.0_Chr2g0103451 610 VHAMHHRDVLAPF-LELPFDFAKKHLDK--RPSHVKLQGSNGEPWSVKFYF--ADELAGFQDGWIEFVHGLNLKEDDVCAFELIDDT 691
                             5667777888887.99*********655..4457***************44..4444569*************************9* PP

                             EE..EEEEE-S CS
                      B3  89 efelvvkvfrk 99 
                             +f + v+v+r+
  RcHm_v2.0_Chr2g0103451 692 KFIFDVHVYRN 702
                             **999999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    
MTSLCRKKDP RQKFSPTNCS FLRSMSEDSP TAYLKIPRIY LKKCREKYEK ELSKDIHLKL  60
PCGTEWKVEV TEHKGHFWFE KGWEDFFKFY SLQSNGSIDF QYEGNSRFKV KIYDKSKIEI  120
DYPIKSTDMQ ENGVNDHSPL ARPQQPQKKK EATSSGGETD LSANKDEGGK SSTTQRSRKP  180
TTKVPMRMDS SATGGEVTAF QKANEFKSRN PSCFLVTMHS SYIKGHMLWL STEISKNMLT  240
NLSKNSGNVS LRVSEGSTRR YWAVEMKYDI ERARFRLQSG WNKFVQGNKL NAGDVCGFML  300
IDKIELLFEV NIFRRTEVAT SSPGIDEDDV DDKDDRGLHD TNDDYAANEN THRSFKKVLQ  360
KSAINHCLWL CSRFSQKHLS NNPSNAELHV PGRTTTWHVG LKYEVGRKRA KFQSGWTKFV  420
RDNNLKIEDE CVFVLTDENT FSFVVIVAAK STLQPDIDDA NDNIKDDEDS KNEVDDDTSD  480
EDYSDDEGDD YGVDNAHNDE EEDEDEDIEY SSPQQLHKRK RLSSSTKSSI KDVGASTSTG  540
QFLKQRPGVP RNFHPITVTG NDIALQRAKA FKDVKPHSDV PRSMNPMMAR GKNKALWRAQ  600
HFHSVEPYFV HAMHHRDVLA PFLELPFDFA KKHLDKRPSH VKLQGSNGEP WSVKFYFADE  660
LAGFQDGWIE FVHGLNLKED DVCAFELIDD TKFIFDVHVY RNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein