PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 395aa    MW: 46084.2 Da    PI: 10.4525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.3e-1528116599
                             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              ++ d+++ + l +pk+f++++g++   s  + ++ + g +We+ l  + + ++++++kGW eF k + L+ g +++F ++g+s+f 
  RcHm_v2.0_Chr2g0103441  28 VISDDTSRDRKLGIPKSFLDKYGED--LSNLVYFKLPCGPEWEIGL--TSYNKEVWFRKGWPEFSKFHSLEKGYSLLFGYEGDSRF- 109
                             456777778899**********977..899****************..999999****************************9999. PP

                             .EEEEE-S CS
                      B3  92 lvvkvfrk 99 
                               v++f+ 
  RcHm_v2.0_Chr2g0103441 110 -QVSIFDG 116
                             .9999985 PP
2B356.16.6e-18227317396
                             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             kv ++s++  +++l+lpk+f+++h + ++++  +   + + ++W vkl+y+ ++gr  +++GW +Fv+++++k+gD++ F l+++++
  RcHm_v2.0_Chr2g0103441 227 KVPMHSSYIIQKNLWLPKTFVQTHLLMQPSN-AILQVSGRRKTWPVKLTYEETKGRAKFQSGWTNFVRDKNIKDGDVCEFVLIDSNR 312
                             5666777777778***********4444444.344455788****************************************998555 PP

                             E..EEEE CS
                      B3  90 felvvkv 96 
                                v+ v
  RcHm_v2.0_Chr2g0103441 313 L--VFEV 317
                             4..5544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MASSYLRRKC DDHRPRSSST TPRRFLTVIS DDTSRDRKLG IPKSFLDKYG EDLSNLVYFK  60
LPCGPEWEIG LTSYNKEVWF RKGWPEFSKF HSLEKGYSLL FGYEGDSRFQ VSIFDGSNNM  120
EIDYTTSMLE SEEGDQDDDI SLEISEDVRR TALSHKQNRT VLSPKAEINV NFEERVKKET  180
HWSKSDMKRK HDFPAKRDGG GTSSTQRCRK QTPRVFRRAK SYKRSFKVPM HSSYIIQKNL  240
WLPKTFVQTH LLMQPSNAIL QVSGRRKTWP VKLTYEETKG RAKFQSGWTN FVRDKNIKDG  300
DVCEFVLIDS NRLVFEVRIN TANRTLSPGN LFVSIGMLFD QVPNRLGINA ITSITIVKGL  360
QTLMMVMMRM MKMKMKMKRI VMMNQLKSWI IFHLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein