PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 318aa    MW: 36157.4 Da    PI: 5.821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1724115199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ffk+ ++  +     l+lp kf++++gg+   s  + l+ + g +Wev +  ++++++++++kGW eF ++  L+ g f+vF ++g+
  RcHm_v2.0_Chr2g0103421  24 FFKIILNGTSRD-TKLRLPYKFVKKYGGE--LSHSVCLKVRGGSKWEVDV--TRRDCQVWFEKGWPEFSNSCSLDHGHFLVFGYEGN 105
                             556664444444.459**********988..7789***************..**********************************9 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                             s+f   v +f+k
  RcHm_v2.0_Chr2g0103421 106 SKF--DVCIFDK 115
                             999..9999997 PP
2B346.37.5e-15226313595
                             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              ++++ ++ g l +p  f +++  k  ++++++l++ ++ + W + + y k+sgr  l++GW +Fv++n+L +gD +vF l++++ef
  RcHm_v2.0_Chr2g0103421 226 AINPSCTRGGYLHVPSLFSKTYLVK--QPTQIMLQTvSNEEPWYIDMHYHKSSGR--LRTGWPRFVRSNNLLVGDACVFVLKDNNEF 308
                             56888899999********999544..6678*****566699*****99****99..9***********************998998 PP

                             ..EEE CS
                      B3  91 elvvk 95 
                              + v 
  RcHm_v2.0_Chr2g0103421 309 LFDVV 313
                             55555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MTMDHRRECD GQPPFCAPNT TPHFFKIILN GTSRDTKLRL PYKFVKKYGG ELSHSVCLKV  60
RGGSKWEVDV TRRDCQVWFE KGWPEFSNSC SLDHGHFLVF GYEGNSKFDV CIFDKTATEI  120
DYPITVEDGD SSGEVLEDCP RGSRNSGDKS PLPGSPPCKK NRKSSTGKPE INPKIQMDDD  180
DDENENDESD ESSEEGEDED NHGIKKETAF QRAKAYKPAD PHFVVAINPS CTRGGYLHVP  240
SLFSKTYLVK QPTQIMLQTV SNEEPWYIDM HYHKSSGRLR TGWPRFVRSN NLLVGDACVF  300
VLKDNNEFLF DVVFYRAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-37B3 family protein