PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 466aa    MW: 52778 Da    PI: 7.5937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.5e-13998199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                            ffkvl     +  +rl +p  f+e+++g  +e+  l+      ++W v +  +   +++++++GWkeFv +ngL+  +f+vF ++g+se
  RcHm_v2.0_Chr2g0103391  9 FFKVL--IGDHFCNRLKIPGAFLEHFDGRVPEQCHLR---IGTQTWLVDV--EMVHQKFYFQNGWKEFVLENGLRGCEFLVFFYNGNSE 90
                            67777..44455578********88855555554666...566*******..999999****************************999 PP

                            E..EEEEE-S CS
                      B3 90 felvvkvfrk 99
                            f  +v+++ k
  RcHm_v2.0_Chr2g0103391 91 F--YVHIYGK 98
                            9..9998765 PP
2B342.98.8e-14350437599
                             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                             ++ps+   s+ + +p++fa +h g + +   ++l+  + r+W++ +      +++ l++GW eF ++n+Lk+gD++vF+l++ s   
  RcHm_v2.0_Chr2g0103391 350 MSPSYIRGSC-VHFPRTFAYRHLGRHCS--RIKLRV-NKRRWRLGI--YHVHKTVRLQAGWIEFKHDNNLKVGDVCVFELTD-SINV 429
                             5566666666.9**********666434..566555.679******..66666899***********************987.5555 PP

                             .EEEEE-S CS
                      B3  92 lvvkvfrk 99 
                             l v++fr+
  RcHm_v2.0_Chr2g0103391 430 LDVTIFRS 437
                             68888885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MATTRKPSFF KVLIGDHFCN RLKIPGAFLE HFDGRVPEQC HLRIGTQTWL VDVEMVHQKF  60
YFQNGWKEFV LENGLRGCEF LVFFYNGNSE FYVHIYGKNA CRKEFADAAA GVSGTPKSMH  120
VGSSRGMEEA DSNDSSVQIL DDFPTCSRRA GEKSSLPSHQ QHKKDSTSWI GKETHGPKPG  180
ITRKDNDFPA EQYVEGTSSL KPKHEVLGRM HTDNDDDDKE EEESEEDDDD YEEDEEIEED  240
ENEADKSDGD GGKSDDSIEI LDEFPRCSKA KTMRKSSELQ KRKINSSKAK TKRSITRASG  300
SSSNQKITGW KYKALRKMPG SNGIGELIAR HRANDFISKS DKLDSCLIAM SPSYIRGSCV  360
HFPRTFAYRH LGRHCSRIKL RVNKRRWRLG IYHVHKTVRL QAGWIEFKHD NNLKVGDVCV  420
FELTDSINVL DVTIFRSAEA ANCTLPGGRQ TTGVQFKSEK GKEKAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-14B3 family protein