PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0102171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 558aa    MW: 62534.8 Da    PI: 6.2368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0102171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.39.8e-991895572374
                    GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspd....gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                             +e L+++A++++s++l+laq +L rl+++   +sp+    g+p+qR+a yf+ AL++ l++   ++ ++   + +s+++ ++++ a+
  RcHm_v2.0_Chr2g0102171 189 IEELIRAADCFDSDELNLAQVILDRLNQRqrlSSPNpkplGKPLQRAAVYFKDALQSLLNN---STGSSPVRNLSSWSEIVQTIRAY 272
                             679************************987775654222277******************9...555666666677788******** PP

                    GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetger 164
                             k fs +sPi+ fsh+t+Nqa+lea++g + vH+iDfdi+ G+Q+++L+++La+++    ++pp lRiT+v+++e   + e + ++e+
  RcHm_v2.0_Chr2g0102171 273 KGFSGISPIPMFSHFTTNQALLEALNGFSFVHVIDFDIGLGGQYASLMKELAEKAdvsrSNPPVLRITAVVPEE--YAVESRLVREN 357
                             ******************************************************9998889***********66..99999****** PP

                    GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhn 249
                             L++fA+el+++f++++l+++++e l+++++++ +gE++a+ l+  ++r l++  +     +++L  ++++sP+vvv+v+ e  a+++
  RcHm_v2.0_Chr2g0102171 358 LSQFAQELKIRFQIEFLLVRTFEILSFKAIKFMEGEKTAILLSPYIMRRLSSAEN----VRAFLGDIRRVSPTVVVFVDGEglAETG 440
                             *************************************************933333....557*******************88888* PP

                    GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                             ++sF + f++ le++s +++sl+a + +  e  +k+E +ll+++i+ vv ++g++       + +Wre ++ aG+++v+ls++a  q
  RcHm_v2.0_Chr2g0102171 441 ATSFRRNFVSGLEFFSIVLESLDAAV-QGGEMVRKIETFLLRPKIEAVVEAAGRR-------VPQWREVFHGAGMRAVELSQFADFQ 519
                             ************************97.6778999*******************98.......99*********************** PP

                    GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             a++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  RcHm_v2.0_Chr2g0102171 520 AQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 557
                             *************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MRVPVTTPQT NNNNNNSNQS PNPKPETNLG FHTPSRINPN LCYEPTSVLD LRHSPSPVAA  60
DKPSKVSAIS DVLTHPNHHE PVEWVDEQDL HNLDWESLMI DLGLHDDSVL NLRPTTNTQL  120
NPHPNSEPQI PHLPEYPLPQ PFDPTQLVHS DFNLSGVYSS QNFSHHNLPS YDQTDIHSSV  180
NSNVGFDFIE ELIRAADCFD SDELNLAQVI LDRLNQRQRL SSPNPKPLGK PLQRAAVYFK  240
DALQSLLNNS TGSSPVRNLS SWSEIVQTIR AYKGFSGISP IPMFSHFTTN QALLEALNGF  300
SFVHVIDFDI GLGGQYASLM KELAEKADVS RSNPPVLRIT AVVPEEYAVE SRLVRENLSQ  360
FAQELKIRFQ IEFLLVRTFE ILSFKAIKFM EGEKTAILLS PYIMRRLSSA ENVRAFLGDI  420
RRVSPTVVVF VDGEGLAETG ATSFRRNFVS GLEFFSIVLE SLDAAVQGGE MVRKIETFLL  480
RPKIEAVVEA AGRRVPQWRE VFHGAGMRAV ELSQFADFQA QCLLGKVQVR GFHVAKRQAE  540
LVLCWHDRAL VATSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-168GRAS family protein