PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0100071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 261aa MW: 29831.3 Da PI: 8.8317 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.9 | 1.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+ sst+k++ey+s RcHm_v2.0_Chr2g0100071 9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAQVSLIMQSSTDKIHEYIS 59 569**********************************************86 PP | |||||||
2 | K-box | 84.4 | 2.4e-28 | 71 | 166 | 1 | 96 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 yqk+ + +l+++++e ++++l kLk+ +++L+r +R++lG dL+ Ls+ eLq Le+ +++s++ iR++K+++l++q e+++kk k+l RcHm_v2.0_Chr2g0100071 71 YQKNLQIDLWNSHYEAMKENLWKLKEVNNKLRRDIRQRLGHDLNGLSYAELQDLEETMNQSVQIIRDRKYHVLKTQAETTRKKVKNL 157 78888899******************************************************************************* PP K-box 88 qeenkaLrk 96 +e+n +L + RcHm_v2.0_Chr2g0100071 158 EERNSNLMH 166 ******986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AQVSLIMQSS TDKIHEYISP 60 TTTTKKMFDL YQKNLQIDLW NSHYEAMKEN LWKLKEVNNK LRRDIRQRLG HDLNGLSYAE 120 LQDLEETMNQ SVQIIRDRKY HVLKTQAETT RKKVKNLEER NSNLMHGYGA PGNEDPQYGY 180 VDNEGDYESA VALANGASNL YFFNRVHNNH NLDHGHGGGS LVSSITHLQN PNNHGNHNLE 240 NGHGGGSLIS SITHLHDLRL A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-69 | MIKC_MADS family protein |