PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0097321
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 330aa    MW: 38131.8 Da    PI: 9.2695
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0097321genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.39.5e-26203252352
                  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ++i+l dl kyF+ pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl
  RcHm_v2.0_Chr2g0097321 203 AKITLPDLVKYFDIPIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 252
                             78**********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDSCDPHFLR SLLVFKNTIN QELIRSLHVY GLEDGKENEV EREFLFSENG SYVEFRAYPV  60
LRLMKFRVSQ VLEGYVNGCW VCILAFHANR SPNFTCIPSI LSVSRNSQLK LIPNLANDLQ  120
MVVEKTCIKA EKEPLQKSDE ETSQGIDENH CQLRRSLPML DLDLNRPPCP ATMSESSDDQ  180
ESGRQSPGLI EKKNRRAASD RIAKITLPDL VKYFDIPIVE ASRSLNVGLT VLKKKCREFG  240
IPRWPHRKIK SLDSLIRDLQ EETEFQQKEN KAAALAVAKR QRMLESEKES IERRPFLDMK  300
IETKRFRQDV FKRRHRARVL RSQGLSLTGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-86Nin-like family protein