PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0095551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 1163aa    MW: 130207 Da    PI: 6.6863
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0095551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.97e-22126227199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD v
  RcHm_v2.0_Chr2g0095551 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDSAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDAV 210
                             99*****************************96555444..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  RcHm_v2.0_Chr2g0095551 211 LFI--RDEKSQLLLGIRRA 227
                             ***..45677789999997 PP
2Auxin_resp122.14.2e-40252334183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aaha++++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+s+ldpvrW+ S+Wr+L+
  RcHm_v2.0_Chr2g0095551 252 AAHATANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISELDPVRWKSSQWRNLQ 334
                             79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1163 aa     Download sequence    
MKAPTNGFLA TSVEGEQKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLICLLHN VTLHADTETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQSR  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFTMQ PPAQELVARD LHDSAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDAV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHATANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISEL DPVRWKSSQW RNLQVGWDES TAGDRPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDE FGMKNSPSSI FPGLSLVQWM  420
NMQQNNQFSA PQSGFFPSMV PPTTLHNGTD DPSKLLNFQA PGLTAPGQLN KAAPQNQVSQ  480
VQQPTVAWPQ QQQLQQLMQN PMNQQQQNHS QQQQLQQLLH TPLNQQQQNH PQQQQLQQLM  540
QTPANQQLQN YSQQQQQQRE QQNHQEPQGL QQLQQLHQLH QQQPQRQQSQ QQQQLGQLTL  600
VSNGLVTPNQ IPSQNSHQPM MFTQLQQQHS LTSSTQSQQA VHTPNKNSFQ SAAGTQDSQI  660
QQQLEPQPSL LLRQQQAQLQ QSPLQLLQQP QKAQQQPQVQ SSSQQALSEQ QLHLHLLQKQ  720
QQQQQQQQQQ QQQQQQQLFS PSSPLLQPQM LQQQLAHQQN QQLQQLQLPL SQHHQQQLSG  780
NSFSADKLLS SNNFSASPMM QAQHVSSIQQ QNQHKPVTAI RSHSNLTEGD GPSCSTSPST  840
NNCQVSSSNL LNRNQQGTAM LIGDPVAEPS SNLVHDFQSK SDIRIKHELP ISKGLDQIKY  900
KGTITDQLEA SSSGTSYCLD ASTIQQNYAL PSFCLDGDVQ SHPRNNLPFS ANVDGLAPDT  960
LMSRGYDSQK DLQNLLSNYG GTPRDIETEL STAAISSQSF GAPNMPFKPG CSSDVALNDA  1020
GVLNNGLWGS QAQRLRTYTK VQKRGSVGRC IDVTRYKGYD ELRHDLARMF GIEGQLEDPQ  1080
RTDWKLVYVD HENDILLVGD DPWEEFVSCV QSIKILSSVE VQQMSLDGDL GNVPVPNQAC  1140
SGTDSGNAWR APYEDNSAAS FNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein