PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0093571

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 580aa MW: 64776.3 Da PI: 8.4551

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0093571	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.1e-12	395	439	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ L++llP+ +K +Ka++L+ A +Y+ sL RcHm_v2.0_Chr2g0093571 395 HMISERKRREKLNESFHSLKSLLPPG-----TKKDKASVLTTARDYLTSL 439 8899******************97.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MDTAFELDEG SRANFLKLVK QSFSCSYICL WRSYIPNCLL FFDGVYDEEN QPGSSSSSGP 60 SLARRLFDEY RLSMFPIVQN ECVPGFAFRN GLAYVELQEM DLLRLASVQI QKQFYQEARI 120 KTAVFMGCKS GEIELGFSNV SQMNVKKELI MRSWMLPEAF CRSQLSPRTV EVVSSRANTE 180 QQNQLSSSSS SLRSHSTMDS PEYSSLLFNT LQTSTAPTSL NIPADQVYNT TNFTSSLQPI 240 VSPNTNIFSS TSSSTNPHQQ AMQAFSRIRG NIQLPAPEIE DAEITRAILA VLTTPSPSSS 300 PSISSHQSVP PALKDDPAPS PSHLKPKPSS AFKNYNYISS PLAPRTQTKG AANLAVRKQT 360 MVKRSISFLR SLNLLRIRDQ GMQAATRPTT SQLHHMISER KRREKLNESF HSLKSLLPPG 420 TKKDKASVLT TARDYLTSLK AQVDELSKRN QQLEAAARLI AKEDQEEEAA GSSSTERVTV 480 MLTHVSGWST DPDQQIIALQ VIVRSGECST EDMVIRILEF LKQVKNLSVV SMEASTWKTE 540 LHPNINRVVL RLRVDDQANE WDESAFQEAV RRVVADLAQR

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MDTAFELDEG SRANFLKLVK QSFSCSYICL WRSYIPNCLL FFDGVYDEEN QPGSSSSSGP  60
SLARRLFDEY RLSMFPIVQN ECVPGFAFRN GLAYVELQEM DLLRLASVQI QKQFYQEARI  120
KTAVFMGCKS GEIELGFSNV SQMNVKKELI MRSWMLPEAF CRSQLSPRTV EVVSSRANTE  180
QQNQLSSSSS SLRSHSTMDS PEYSSLLFNT LQTSTAPTSL NIPADQVYNT TNFTSSLQPI  240
VSPNTNIFSS TSSSTNPHQQ AMQAFSRIRG NIQLPAPEIE DAEITRAILA VLTTPSPSSS  300
PSISSHQSVP PALKDDPAPS PSHLKPKPSS AFKNYNYISS PLAPRTQTKG AANLAVRKQT  360
MVKRSISFLR SLNLLRIRDQ GMQAATRPTT SQLHHMISER KRREKLNESF HSLKSLLPPG  420
TKKDKASVLT TARDYLTSLK AQVDELSKRN QQLEAAARLI AKEDQEEEAA GSSSTERVTV  480
MLTHVSGWST DPDQQIIALQ VIVRSGECST EDMVIRILEF LKQVKNLSVV SMEASTWKTE  540
LHPNINRVVL RLRVDDQANE WDESAFQEAV RRVVADLAQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	399	404	ERKRRE
2	400	405	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-63	bHLH family protein