PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0093041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HRT-like | ||||||||
Protein Properties | Length: 464aa MW: 51693.1 Da PI: 10.0309 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 60.9 | 2e-19 | 266 | 296 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dGs+C+++Pv+gRKRC+eHKGmRi RcHm_v2.0_Chr2g0093041 266 ICGVAVGDGSICRKEPVQGRKRCAEHKGMRI 296 8*****************************7 PP | |||||||
2 | HRT-like | 47.5 | 3.1e-15 | 335 | 365 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++ +dGs+C+++Pv+gRKR +eH GmRi RcHm_v2.0_Chr2g0093041 335 ICGLAAGDGSICRTPPVQGRKRSAEHRGMRI 365 8*****************************7 PP | |||||||
3 | HRT-like | 58.3 | 1.3e-18 | 417 | 447 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGs+C+++P++gRKRC eHKG+Ri RcHm_v2.0_Chr2g0093041 417 ICGFILADGSPCRTEPIQGRKRCDEHKGRRI 447 8*****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence |
MVASDLTVAL QRLKREECKR TKHDPHFSKW KVLVGPCDWE DFSVGKEGAE RYRVHNLPRN 60 ESPGVYELGV AVLRSGLGRG IEADKIVPVY LGQADSVRTR LQQYGRTGAH LGKCCSVGIP 120 SERIRKGPGL FEQILARGYP IVYRWAPMGT KSEALKTESQ LLNTFDYAWN TSINGARRPD 180 DVLQKLKKTS SKPTRFTNIV QRLLPFRQKQ VGIRINSSKL VSTEDKFSDY ADRESRTLTA 240 QVFKFGRSQP RLVLDRSGIT QENTIICGVA VGDGSICRKE PVQGRKRCAE HKGMRITGLI 300 TVRISNSNFD SKCSVISNRE FVSDESGITQ ENTEICGLAA GDGSICRTPP VQGRKRSAEH 360 RGMRIKGSIT VRISDKNVDS KCSVLNNTEL DSHDASNVKY EPVQLPPVHV CESSTSICGF 420 ILADGSPCRT EPIQGRKRCD EHKGRRIQKC KSKSVKEEKV KICA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 7e-99 | HRT-like family protein |