PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0093031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HRT-like | ||||||||
Protein Properties | Length: 498aa MW: 54519.7 Da PI: 10.0809 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 56.9 | 3.5e-18 | 273 | 303 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dGs+C++ Pv+gRKRC+eHKG Ri RcHm_v2.0_Chr2g0093031 273 ICGVAVGDGSICRKAPVQGRKRCAEHKGTRI 303 8****************************97 PP | |||||||
2 | HRT-like | 56.9 | 3.4e-18 | 338 | 368 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +++Gs+C+r+Pv+gR RC+eHKGmRi RcHm_v2.0_Chr2g0093031 338 ICGVVTGNGSTCRRPPVPGRVRCAEHKGMRI 368 8*****************************7 PP | |||||||
3 | HRT-like | 56.9 | 3.4e-18 | 403 | 433 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +++Gs+C+r+Pv+gR RC+eHKGmRi RcHm_v2.0_Chr2g0093031 403 ICGVVTGNGSTCRRPPVPGRVRCAEHKGMRI 433 8*****************************7 PP | |||||||
4 | HRT-like | 46.8 | 4.8e-15 | 468 | 498 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++++ Gs C+r+Pv+gR+RC+ HKG+Ri RcHm_v2.0_Chr2g0093031 468 ICGARTNTGSACRRPPVQGRQRCAVHKGRRI 498 8*****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence |
MPLILELEDE ESPMVAGQVL TLAVQSPTLK REERKRLQHG PHFSKWKVLV APGKDGAERY 60 RVQNLPGNES PGVYELGVAV PPSGSGRGIK ADQIVPVYVG QADSARTRLQ QYGRTGAHLG 120 RSCSGNPSEQ ICKGPGLIEE MLESGYSIVY RWAPMGTKSE AERTERQLLD THDYAWNTRI 180 NGARRRDDVL QKLKEIPSKL TRFTNIVPRP LPSRQKQVGI RINSSNLVST EDKFSNYADR 240 ESRNLIPQVF KFGRSQPRLV LDGSGITWED TIICGVAVGD GSICRKAPVQ GRKRCAEHKG 300 TRITESITAS NADSKSSFIG TRELISYKSG ITQENTEICG VVTGNGSTCR RPPVPGRVRC 360 AEHKGMRITG STTASSADSK SSFIGTRELI SYKSGITQEN TEICGVVTGN GSTCRRPPVP 420 GRVRCAEHKG MRITGSTTAS NVDSRCSFIS NREFVSYESG ITWENTGICG ARTNTGSACR 480 RPPVQGRQRC AVHKGRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 3e-84 | HRT-like family protein |