PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0093031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HRT-like
Protein Properties Length: 498aa    MW: 54519.7 Da    PI: 10.0809
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0093031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.93.5e-18273303131
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                             iCGv+ +dGs+C++ Pv+gRKRC+eHKG Ri
  RcHm_v2.0_Chr2g0093031 273 ICGVAVGDGSICRKAPVQGRKRCAEHKGTRI 303
                             8****************************97 PP

2HRT-like56.93.4e-18338368131
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                             iCGv +++Gs+C+r+Pv+gR RC+eHKGmRi
  RcHm_v2.0_Chr2g0093031 338 ICGVVTGNGSTCRRPPVPGRVRCAEHKGMRI 368
                             8*****************************7 PP

3HRT-like56.93.4e-18403433131
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                             iCGv +++Gs+C+r+Pv+gR RC+eHKGmRi
  RcHm_v2.0_Chr2g0093031 403 ICGVVTGNGSTCRRPPVPGRVRCAEHKGMRI 433
                             8*****************************7 PP

4HRT-like46.84.8e-15468498131
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                             iCG++++ Gs C+r+Pv+gR+RC+ HKG+Ri
  RcHm_v2.0_Chr2g0093031 468 ICGARTNTGSACRRPPVQGRQRCAVHKGRRI 498
                             8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MPLILELEDE ESPMVAGQVL TLAVQSPTLK REERKRLQHG PHFSKWKVLV APGKDGAERY  60
RVQNLPGNES PGVYELGVAV PPSGSGRGIK ADQIVPVYVG QADSARTRLQ QYGRTGAHLG  120
RSCSGNPSEQ ICKGPGLIEE MLESGYSIVY RWAPMGTKSE AERTERQLLD THDYAWNTRI  180
NGARRRDDVL QKLKEIPSKL TRFTNIVPRP LPSRQKQVGI RINSSNLVST EDKFSNYADR  240
ESRNLIPQVF KFGRSQPRLV LDGSGITWED TIICGVAVGD GSICRKAPVQ GRKRCAEHKG  300
TRITESITAS NADSKSSFIG TRELISYKSG ITQENTEICG VVTGNGSTCR RPPVPGRVRC  360
AEHKGMRITG STTASSADSK SSFIGTRELI SYKSGITQEN TEICGVVTGN GSTCRRPPVP  420
GRVRCAEHKG MRITGSTTAS NVDSRCSFIS NREFVSYESG ITWENTGICG ARTNTGSACR  480
RPPVQGRQRC AVHKGRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-84HRT-like family protein