PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0091241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 385aa    MW: 41902.5 Da    PI: 6.8965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0091241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000522452831255
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  RcHm_v2.0_Chr2g0091241 245 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 283
                             6677889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MNRGHVLQSS PVQQMMAAGN PNWWNINSMR APTTNQPSSS PFLPAPHHPS FFIPQFQPTS  60
SSSSSLPFIP SWHDNNNQNQ NQELPESWSQ LLLGGLVGED DKANGLRQLF HQGKKLEDWE  120
EQILSSQAHL NAPVNVDVKQ ENSPPGSFLY GHHGNGNNNE DFQSQALCSL SQIMPTTTAA  180
SASSPKSSCV TSFGSNMLDF SNKSEGRHPP PSRSSSECNS SATGGAVKKA RVQPSSSAQP  240
TFKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQNQIEALS LPYLGSGSPN  300
MRQQQQQSAV HGERNCMFPE DPGQLLNDNC MKRKGVNSEQ DAYEEPKKDL RSRGLCLVPV  360
SCTLQVGSDN GADYWAPAAL GGGFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-84bHLH family protein