PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0090791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 379aa    MW: 43960.6 Da    PI: 4.2437
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0090791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.44.4e-14123207186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +Wt++ v +L+e+  ++  +l+r++l+  +W++v+ k++e+ ++ers kqC++ ++ l+++ykk+k+  ++   + ss++ yf+++e
  RcHm_v2.0_Chr2g0090791 123 EWTEHAVFVLLEVWGDRFLELGRKSLRSEDWSDVAVKVSEGsKLERSDKQCRKMLDMLKRKYKKEKAKVEE--TGGSSKWGYFKKME 207
                             5*************************************665278***********************9998..47788********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MDDMEDDERY HPKPYNHHSS SNRRKIHTRN NPYSRPPPNR YEPEDDDDAI DDDLDEENYG  60
QDDVVVEEQY QHHPHDLNRS FDAPAENGFE WHPKKRKLKN LDSGYEFAPR VKFPGRVGSS  120
SEEWTEHAVF VLLEVWGDRF LELGRKSLRS EDWSDVAVKV SEGSKLERSD KQCRKMLDML  180
KRKYKKEKAK VEETGGSSKW GYFKKMEMLM ASNMRQECGL ACGVDNGEYV FMNTRVYLEK  240
SNGFDEMRDS PGESETDEEE NESEQNGFGF GIPPRQGGGG GLEGSSFRVL ADSIQKFGEI  300
YENIESSRRQ QMMELEKMRR DFNKEMELQK KQILERAQAE IAKIQEADDD DDDDDDDDDD  360
DDDDDDDDDS DASAEDLSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-73Trihelix family protein