PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0085691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 532aa MW: 58532.7 Da PI: 5.634

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0085691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.9	5.7e-25	185	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk + +rsYYrCt+++C+vkk +e+++ ++++ei+Y+++H+h+ RcHm_v2.0_Chr2g0085691 185 SDGYNWRKYGQKQVKCPPGSRSYYRCTFSECSVKK-IECCNISGHITEIVYKSQHTHD 241 7******************************98.*******************7 PP
2	WRKY	97.6	7.9e-31	357	413	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+ RcHm_v2.0_Chr2g0085691 357 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGIHDHD 413 9*******************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MAEHQSSDAL KKNREEEDDE EFEEEEEDED ESDKEEENQS GIPSVELQSS GAESRDARFE 60 TLAVPQLTEK DQCAGFGVNS ATNDGAQFQE PLGISHQEVL AAAPNQPAQG QIQNLQQLST 120 YPTSLSELSP TSVTQSISPA PSPILPEQRL SLQKVNGLCT PEEDKQISSD FKSISPVPLV 180 KTSASDGYNW RKYGQKQVKC PPGSRSYYRC TFSECSVKKI ECCNISGHIT EIVYKSQHTH 240 DPPRRSNCTR EIKVASSAEC VGNTVIEYPC EILNDSELPT TSKEPIQENP IPERKRQNSN 300 DSDGNGDVMI KEEHINEPES KRRLKKSNSE YSDSLLKPGK KPKFVVHAAG DVGISGDGYR 360 WRKYGQKMVK GNPHPRNYYR CTSAGCPVRK HIETAVDNTS AVIITYKGIH DHDMPVPKKR 420 HGPPSAPLVA AAAPASMNNL QIVKTDTEGH QSSTQWSVDK GAHQSSTQRL VDKGAHQSSM 480 QRSVDKGAHQ SSTQWSVDKG GELTGETLEL GGEKAMESAR TLLSIGFEIK PC

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MAEHQSSDAL KKNREEEDDE EFEEEEEDED ESDKEEENQS GIPSVELQSS GAESRDARFE  60
TLAVPQLTEK DQCAGFGVNS ATNDGAQFQE PLGISHQEVL AAAPNQPAQG QIQNLQQLST  120
YPTSLSELSP TSVTQSISPA PSPILPEQRL SLQKVNGLCT PEEDKQISSD FKSISPVPLV  180
KTSASDGYNW RKYGQKQVKC PPGSRSYYRC TFSECSVKKI ECCNISGHIT EIVYKSQHTH  240
DPPRRSNCTR EIKVASSAEC VGNTVIEYPC EILNDSELPT TSKEPIQENP IPERKRQNSN  300
DSDGNGDVMI KEEHINEPES KRRLKKSNSE YSDSLLKPGK KPKFVVHAAG DVGISGDGYR  360
WRKYGQKMVK GNPHPRNYYR CTSAGCPVRK HIETAVDNTS AVIITYKGIH DHDMPVPKKR  420
HGPPSAPLVA AAAPASMNNL QIVKTDTEGH QSSTQWSVDK GAHQSSTQRL VDKGAHQSSM  480
QRSVDKGAHQ SSTQWSVDKG GELTGETLEL GGEKAMESAR TLLSIGFEIK PC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	1e-116	WRKY family protein