PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0383811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 518aa    MW: 59309.7 Da    PI: 9.8219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0383811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1419108197
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ffkv +p+   +++ l +p k a e+g +   s   tl  + gr+W+v l  ++  +++++ +GW++F++   L +g f+vF+++g+
  RcHm_v2.0_Chr1g0383811  19 FFKVILPPTIENQK-LDIPLKSALEFGDE--LSNVATLIVPAGRVWQVDL--ERAHKTIWFVGGWQKFAEYYSLTDGQFLVFSYQGN 100
                             77888776666665.***********865..8889***************..**********************************9 PP

                             SEE..EEEEE CS
                      B3  88 sefelvvkvf 97 
                             s+f  +v++f
  RcHm_v2.0_Chr1g0383811 101 STF--HVRIF 108
                             999..99887 PP
2B336.21.1e-11264362299
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                             f v ++  +l s  +++p  f ++++    ++  +++ed+++  ++W +++ + + ++ +  ++kG  eF ++n+ k gD+++F+l+
  RcHm_v2.0_Chr1g0383811 264 FAVILQQCNLDSYYMYVPTAFGRRYMRG--CPEYIKFEDSNSneKQWVIRCFFpSDTKVMRRIGKGCGEFFRDNNFKNGDVCLFELI 348
                             566666777778889**********755..7778****977767*******8785555566799*********************** PP

                             SSSEE..EEEEE-S CS
                      B3  86 grsefelvvkvfrk 99 
                             +r++  l+++v+r+
  RcHm_v2.0_Chr1g0383811 349 KRKDVVLKFSVLRN 362
                             *9999999999886 PP
3B333.76.7e-11421513799
                             .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                      B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                             +++++ ++ + +p +f+++h +  ++ + l+  + +  +    ++y+    r+ +++G  eF+k+n+L+egD++vF+l++++   l+
  RcHm_v2.0_Chr1g0383811 421 RAHNMLNSFVHVPAEFVKDHLLGCANFINLKASSDKRGVPCTVCTYEPLHHRMEIRGGFGEFAKDNNLEEGDVCVFELIKSEADALK 507
                             445555556999999999996555566566666544455555556888888899*************************9988889* PP

                             EEEE-S CS
                      B3  94 vkvfrk 99 
                             v++f +
  RcHm_v2.0_Chr1g0383811 508 VSIFHA 513
                             *99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MTVPPSEISL RLSDSKANFF KVILPPTIEN QKLDIPLKSA LEFGDELSNV ATLIVPAGRV  60
WQVDLERAHK TIWFVGGWQK FAEYYSLTDG QFLVFSYQGN STFHVRIFYF SCCEIEYPCV  120
GHSIKHEEDV EDDVCGTLPS PSKGKGKCVD QHVKRKRKSV AIAKRFEDDV YKTLPSSSKG  180
KGKDQHVKRN RKSVAIAKRF KRAKLKVQRM PSSQEFPTRK KKYKEIFVKN IAAYTYPNCK  240
MTIAKEQQKV IHATKMFNLE NPFFAVILQQ CNLDSYYMYV PTAFGRRYMR GCPEYIKFED  300
SNSNEKQWVI RCFFPSDTKV MRRIGKGCGE FFRDNNFKNG DVCLFELIKR KDVVLKFSVL  360
RNAEYAVRVG GKNKNPKIHD CGTLYFSKKI KELVLSRETK KAMKAAGALK IENPAFMVIL  420
RAHNMLNSFV HVPAEFVKDH LLGCANFINL KASSDKRGVP CTVCTYEPLH HRMEIRGGFG  480
EFAKDNNLEE GDVCVFELIK SEADALKVSI FHASDYAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154183KRKRKSVAIAKRFEDDVYKTLPSSSKGKGK
2155184KRKRKSVAIAKRFEDDVYKTLPSSSKGKGK
3188224KRNRKSVAIAKRFKRAKLKVQRMPSSQEFPTRKKKYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-47B3 family protein