PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0382681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 539aa MW: 58427.6 Da PI: 8.5521

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0382681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.6	1.3e-24	145	188	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e RcHm_v2.0_Chr1g0382681 145 DPEPGRCKRTDGKKWRCSRDVAPNQKYCERHMHRGRPRSRKHVE 188 79****************************************97 PP
2	QLQ	54.3	4e-19	84	116	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT++Q+ +L++Q+++yKy++a+ PvP +Ll++ RcHm_v2.0_Chr1g0382681 84 PFTNQQWKELERQAMIYKYMMASIPVPRDLLFP 116 8*****************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MMMMVHHDNR GRPDQRCDGG DGPTCNRPPG VAEPAAGSSS SSSGGSVLRC LQPFQYLSNT 60 NTHHHTSTAL RSPGGMTTAA LDFPFTNQQW KELERQAMIY KYMMASIPVP RDLLFPTTTA 120 SASASVSQSP LSGGGFNLRL SNSKDPEPGR CKRTDGKKWR CSRDVAPNQK YCERHMHRGR 180 PRSRKHVEIH ASNTTSTTTT IAKRVRRDNN NSNNIRPISP PTISNPSHEM SKNGYPTQFF 240 GSSLQPFHQT QMYLDKAGVK SAPFGGGVNS VSSDREVRGV EWMMKTEATP MSSSDAQWHD 300 MMQSKTELSC SRIPYFDANS SVFGQRSEEE CFLNLNSYTN FNAGDGHHQQ QGNDCNMFLN 360 PDVVALENPL LEETPRSFID AWSKNDNGDN NNNSSLPSSG KLSPSSLTLS MGGYNSISDE 420 MGQTQMSLGC NHGSGNGIKP RVSTWLTPAS WVPSPPGGPL AEVLKPTTSA ASNPSSPITT 480 NGNHGEFSSP LGTTVSSPSG VLQKTFASFS DSSGNSSPNL RSSKAKIETV SLWSNQSNA

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MMMMVHHDNR GRPDQRCDGG DGPTCNRPPG VAEPAAGSSS SSSGGSVLRC LQPFQYLSNT  60
NTHHHTSTAL RSPGGMTTAA LDFPFTNQQW KELERQAMIY KYMMASIPVP RDLLFPTTTA  120
SASASVSQSP LSGGGFNLRL SNSKDPEPGR CKRTDGKKWR CSRDVAPNQK YCERHMHRGR  180
PRSRKHVEIH ASNTTSTTTT IAKRVRRDNN NSNNIRPISP PTISNPSHEM SKNGYPTQFF  240
GSSLQPFHQT QMYLDKAGVK SAPFGGGVNS VSSDREVRGV EWMMKTEATP MSSSDAQWHD  300
MMQSKTELSC SRIPYFDANS SVFGQRSEEE CFLNLNSYTN FNAGDGHHQQ QGNDCNMFLN  360
PDVVALENPL LEETPRSFID AWSKNDNGDN NNNSSLPSSG KLSPSSLTLS MGGYNSISDE  420
MGQTQMSLGC NHGSGNGIKP RVSTWLTPAS WVPSPPGGPL AEVLKPTTSA ASNPSSPITT  480
NGNHGEFSSP LGTTVSSPSG VLQKTFASFS DSSGNSSPNL RSSKAKIETV SLWSNQSNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	7e-36	GRF family protein