PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0382431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HD-ZIP

Protein Properties

Length: 273aa MW: 31857.1 Da PI: 9.5902

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0382431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	83	134	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ Fe ++++ +++ + A++lgL+ rqV +WFqNrRa++k RcHm_v2.0_Chr1g0382431 83 RRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 134 47*************************************************9 PP
2	HD-ZIP_I/II	120.9	6.7e-39	82	172	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 rr+s+eq+klLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L+++yd l+++ e+L++e+++L RcHm_v2.0_Chr1g0382431 82 SRRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRNEYDLLASKFESLKEEKQSLLI 168 69***********************************************************************************98 PP HD-ZIP_I/II 90 elke 93 +l++ RcHm_v2.0_Chr1g0382431 169 QLEK 172 8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MQRSLRGLRL LTPLVKTLHQ SIVPITRKQP RYFVSIPNYI FYKLTSLPRF QSTFTLIMER 60 EVESLETHST AKRKKNNKSL NSRRFSDEQI KLLESIFEAD SKLEPRRKVQ VARELGLQPR 120 QVAIWFQNRR ARWKSKQIEQ DFRTLRNEYD LLASKFESLK EEKQSLLIQL EKLNDLMGKS 180 KVHEESMDGK DLEGSSNKDG DCETTEEKPS HLQSHKNFAS DDVGNEGHEQ LMNMCQVGAI 240 VSPEDWHRFD SGGLFDPPRS SSATSQWLNF WIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-40	HD-ZIP family protein