PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0378721

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 650aa MW: 73982.9 Da PI: 8.334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0378721	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	48	70	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++F+++ +L+ H + H RcHm_v2.0_Chr1g0378721 48 PCEVCHRRFPDNITLQIHRENvH 70 5*****************98877 PP
2	zf-C2H2	11.3	0.0011	73	92	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++Cg sF + +L++H RcHm_v2.0_Chr1g0378721 73 HICEICGLSFYSDTLLQTHK 92 68*****************6 PP
3	zf-C2H2	16.9	1.7e-05	99	122	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++Cg sF++ +L++H ++ H RcHm_v2.0_Chr1g0378721 99 HTCEICGVSFRSDAQLQSHRKSkH 122 79*******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MAGDDVLPPQ IHMKGGEKKK KKKKQKKKKG TTGDMSRPRP DCHDMSPPCE VCHRRFPDNI 60 TLQIHRENVH VLHICEICGL SFYSDTLLQT HKQCVHTLHT CEICGVSFRS DAQLQSHRKS 120 KHPDLKKKKM MKKKKKKKRQ KKKKKNEEEE EEEKAKAEGE HASSFPIEKT MNKAPSPSSS 180 ISGESFPIEK TMYKAPSPSI SGESFPMEKM DQAESILIMV KFDMDDSFSG AIYEIKLDQL 240 QPLEHGKSVG GSNTDPSTLP MLKPVAELFG KGWKTEELFL FDCARIGSLS KLYVLVNQIP 300 CPYLKPVTPE YAFAFDRSLV SELISPPKTT KQYCLVISAY GMLYYLAQPL CFPQIQEPSF 360 ERYDPASDSW ESLPPFPDYS LDQAQTEMTG YAVCYGYILL SMQTEKKYEA VAFHIHSRTW 420 HKVKTSPENP YYYPFYGRAV VLGSTIYALA HNLDLVLVFS FWWDSDKDGD IVKRRHFLGT 480 PLSLLITAKC HPPRRLLGDR TQNLVHLGGR YFCVVQTGQN IDSSEYQYMC ATTFRIAGDG 540 QEMHIKTVRS SVFRVAIEGN DEFEVQFSFT PDCNDIEPVE EQYCVSSALV ERESAWTSDV 600 KEDFFSFPTG PKLGLEAFRA KKEDEKKVFI STTSPETPLL SKGSKKKKKI

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MAGDDVLPPQ IHMKGGEKKK KKKKQKKKKG TTGDMSRPRP DCHDMSPPCE VCHRRFPDNI  60
TLQIHRENVH VLHICEICGL SFYSDTLLQT HKQCVHTLHT CEICGVSFRS DAQLQSHRKS  120
KHPDLKKKKM MKKKKKKKRQ KKKKKNEEEE EEEKAKAEGE HASSFPIEKT MNKAPSPSSS  180
ISGESFPIEK TMYKAPSPSI SGESFPMEKM DQAESILIMV KFDMDDSFSG AIYEIKLDQL  240
QPLEHGKSVG GSNTDPSTLP MLKPVAELFG KGWKTEELFL FDCARIGSLS KLYVLVNQIP  300
CPYLKPVTPE YAFAFDRSLV SELISPPKTT KQYCLVISAY GMLYYLAQPL CFPQIQEPSF  360
ERYDPASDSW ESLPPFPDYS LDQAQTEMTG YAVCYGYILL SMQTEKKYEA VAFHIHSRTW  420
HKVKTSPENP YYYPFYGRAV VLGSTIYALA HNLDLVLVFS FWWDSDKDGD IVKRRHFLGT  480
PLSLLITAKC HPPRRLLGDR TQNLVHLGGR YFCVVQTGQN IDSSEYQYMC ATTFRIAGDG  540
QEMHIKTVRS SVFRVAIEGN DEFEVQFSFT PDCNDIEPVE EQYCVSSALV ERESAWTSDV  600
KEDFFSFPTG PKLGLEAFRA KKEDEKKVFI STTSPETPLL SKGSKKKKKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	24	KKKKKKK
2	18	29	KKKKKKKQKKKK
3	19	30	KKKKKKKQKKKK
4	19	27	KKKKKKQKK
5	20	31	KKKKKKKQKKKK
6	125	143	LKKKKMMKKKKKKKRQKKK
7	126	145	KKKKMMKKKKKKKRQKKKKK
8	126	156	KKKKMMKKKKKKKRQKKKKKNEEEEEEEKAK
9	127	146	KKKKMMKKKKKKKRQKKKKK
10	132	138	KKKKKKK
11	132	143	KKKKKKKQKKKK
12	132	145	KKKKKKKRQKKKKK
13	133	139	KKKKKKK
14	133	144	KKKKKKKQKKKK
15	134	145	KKKKKKKQKKKK
16	134	142	KKKKKKQKK
17	135	142	KKKKRQKK