PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0378081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 666aa    MW: 73285.8 Da    PI: 7.0517
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0378081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.11.6e-1032996662374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++ L+e+A a+s+g+ e+a ++L+rl +  +p+ ++ +Rl  +++ AL++r++     + +  p+se     ++e++ +++ ++e+ 
  RcHm_v2.0_Chr1g0378081 299 KQSLMEAASAISEGKSEAAAEILTRLTQVTNPRPNSEHRLLEFMASALKSRVNP----VDNPPPVSELF---TQEHAGSTQSLYELI 378
                             578**************************************************9....44444444444...899999********* PP

                    GRAS  89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAe 170
                             P++++++++aN aIlea+  +    ++vH+iDfdi+qG Q+  Ll+aL+ Rp+g+   ++iT+v +  +g +++l++++++L+++A+
  RcHm_v2.0_Chr1g0378081 379 PCFNLGFVAANLAILEATLADqsttNKVHVIDFDIGQGCQYRHLLRALSRRPNGKSsVVKITTVPD--NGGEDRLRSVRQNLSQMAK 463
                             *****************8655557799*************************6655499*****99..77***************** PP

                    GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                             + gv +efnv v+++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+
  RcHm_v2.0_Chr1g0378081 464 NWGVGLEFNV-VSQKLSELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMARV 549
                             *********9.8*************************************************************************** PP

                    GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa.klllrk 343
                              e++ yy al+ds+ea  ++++ +r+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  ++s++++++  + l + 
  RcHm_v2.0_Chr1g0378081 550 NESCAYYGALMDSVEAV-ANDHPDRVKAEEA-LSRKLANSVACEGRDRVERCEVFGKWRARMGMAGFELRRMSQSVTESLgNGLFSG 634
                             **************998.7999*********.*******************************************998872456777 PP

                    GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  g++v+ee+g++++gWk+r+L+++SaWr
  RcHm_v2.0_Chr1g0378081 635 NRvHPGFTVKEENGAVCFGWKSRTLTVASAWR 666
                             77889**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    
MQSGFNSGNQ GLPDFYAGGG RSIGSTMSNH PSQPQYQRSQ LPGLFMDPTG PQIGRQTQNP  60
HHNTAGLIGK RTLAEFQYHQ HQNPYQQNLT NQQNIYLRSL KPKTTANYQH SNFQHASPIS  120
PLSPIDFSSA SSYIGSENSN TSSTTSSMLS QRCRLPLLQQ LRPQTVINPM FQASSSPYVN  180
HSNTVQPLQN QIVQNRVPVS AIESEKKMNN PVSSVDSEKK MIDHRLQELE KQLLDDNDEE  240
EEGGDAVSVI TKTNSEWSET IQNLIGPNQT TQKPVSPSPT SSSSSSSSVA SPATLTCSKQ  300
SLMEAASAIS EGKSEAAAEI LTRLTQVTNP RPNSEHRLLE FMASALKSRV NPVDNPPPVS  360
ELFTQEHAGS TQSLYELIPC FNLGFVAANL AILEATLADQ STTNKVHVID FDIGQGCQYR  420
HLLRALSRRP NGKSSVVKIT TVPDNGGEDR LRSVRQNLSQ MAKNWGVGLE FNVVSQKLSE  480
LNRESLGCEP DEPIAVNFAF KLYSMPDESV STDNPRDELL RRVKGLAPRV VTLVEQELNT  540
NTAPFMARVN ESCAYYGALM DSVEAVANDH PDRVKAEEAL SRKLANSVAC EGRDRVERCE  600
VFGKWRARMG MAGFELRRMS QSVTESLGNG LFSGNRVHPG FTVKEENGAV CFGWKSRTLT  660
VASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-162GRAS family protein