PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0376331

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 326aa MW: 33999.1 Da PI: 6.788

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0376331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.8	2.8e-36	53	124	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +k+++++++hTkv+gR+RRvR++a caar+F+L++eLG+++d++t+ WLl+ a+pai+++tgt++ +a ++ RcHm_v2.0_Chr1g0376331 53 VVKRSSTKDRHTKVEGRGRRVRMPAACAARVFQLTRELGHKSDGETVRWLLEHAEPAIIAATGTGTVPAIAV 124 5799************************************************************88888444 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MEPNQRQSLE ETDGITNPSV SGQQFPAVAK KEEFEDGSLS MGLIPVPAPA KPVVKRSSTK 60 DRHTKVEGRG RRVRMPAACA ARVFQLTREL GHKSDGETVR WLLEHAEPAI IAATGTGTVP 120 AIAVSVGGTL KIPTSSLANP NGEVSELPRK KRKLHCNSDF VDVEELRSIS SGLAPIAPVN 180 YGGGGGGALL PMWQFGANVP FFMFPNSGWA IPSDSVSGHT IFDLQGRPIS NFPVTALQSG 240 VQVCGDVDVQ ATSGSISSGG GGGSGSTSLG ASNSNAVTSS DTSATTAAPI SHSQLLRDFS 300 LDTLDKRELQ FLGGLCGNSE AQYSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	PRKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-61	TCP family protein